From 029cd4404213512a2f3ab0030c963e5d03f215aa Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Tue, 30 Dec 2025 19:11:53 +0100
Subject: [PATCH 1/9] Switch from pixi to uv

---
 .github/workflows/main.yml |   34 +-
 CHANGES.md                 |    1 +
 pixi.lock                  | 8560 ------------------------------------
 pyproject.toml             |   44 -
 4 files changed, 19 insertions(+), 8620 deletions(-)
 delete mode 100644 pixi.lock

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index db526fa..0fb04d4 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -22,39 +22,41 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v6
-      - uses: prefix-dev/setup-pixi@v0.9.3
+      - uses: actions/checkout@v5
+      - uses: astral-sh/setup-uv@v7
         with:
-          pixi-version: v0.50.1
-          environments: typing
-      - run: pixi run -e typing typing
+          enable-cache: true
+      - name: Run type checking
+        run: uv run --extra test --extra typing ty check src/ tests/
 
   run-tests:
 
-    name: Run tests for ${{ matrix.os }} on ${{ matrix.environment }}
+    name: Run tests for ${{ matrix.os }} on ${{ matrix.python-version }}
     runs-on: ${{ matrix.os }}
 
     strategy:
       fail-fast: false
       matrix:
         os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
-        environment: ['py310', 'py311', 'py312', 'py313', 'py314']
+        python-version: ['3.10', '3.11', '3.12', '3.13', '3.14']
 
     steps:
-      - uses: actions/checkout@v6
-      - if: matrix.os == 'macos-latest' || matrix.os == 'windows-latest'
-        uses: julia-actions/setup-julia@v2
-      - uses: prefix-dev/setup-pixi@v0.9.3
+      - uses: actions/checkout@v5
+      - uses: julia-actions/setup-julia@v2
         with:
-          pixi-version: v0.50.1
-          # cache: true
-          environments: ${{ matrix.environment }}
+          version: "1"
+      - uses: astral-sh/setup-uv@v7
+        with:
+          python-version: ${{ matrix.python-version }}
+          enable-cache: true
+      - name: Install Julia dependencies
+        run: julia --project=. --eval 'import Pkg; Pkg.instantiate()'
 
       # Unit, integration, and end-to-end tests.
 
       - name: Run unit tests and doctests.
         shell: bash -l {0}
-        run: pixi run -e ${{ matrix.environment }} test -m "unit or (not integration and not end_to_end)" --cov-report=xml -n auto
+        run: uv run --extra test pytest -m "unit or (not integration and not end_to_end)" --cov src --cov tests --cov-report=xml -n auto
 
       - name: Upload unit test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5
@@ -63,7 +65,7 @@ jobs:
 
       - name: Run end-to-end tests.
         shell: bash -l {0}
-        run: pixi run -e ${{ matrix.environment }} test -m end_to_end --cov-report=xml -n auto
+        run: uv run --extra test pytest -m end_to_end --cov src --cov tests --cov-report=xml -n auto
 
       - name: Upload end_to_end test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5
diff --git a/CHANGES.md b/CHANGES.md
index 06b7d64..f62891b 100644
--- a/CHANGES.md
+++ b/CHANGES.md
@@ -7,6 +7,7 @@ releases are available on [PyPI](https://pypi.org/project/pytask-julia) and
 
 ## 0.x.x - 2024-xx-xx
 
+- {pull}`??` switches CI and development tooling from pixi to uv.
 - {pull}`62` removes tox in favor of pixi for typing.
 - {pull}`56` updates pre-commit hooks.
 - {pull}`54` drops support for Python 3.8 and 3.9 and adds support for Python 3.14.
diff --git a/pixi.lock b/pixi.lock
deleted file mode 100644
index fbd0968..0000000
--- a/pixi.lock
+++ /dev/null
@@ -1,8560 +0,0 @@
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diff --git a/pyproject.toml b/pyproject.toml
index e26f028..09de93d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -110,47 +110,3 @@ markers = [
     "end_to_end: Flag for tests that cover the whole program.",
 ]
 norecursedirs = [".idea"]
-
-[tool.pixi.project]
-channels = ["conda-forge"]
-platforms = ["win-64", "linux-64", "osx-64", "osx-arm64"]
-
-[tool.pixi.pypi-dependencies]
-pytask_julia = { path = ".", editable = true }
-
-[tool.pixi.environments]
-default = { solve-group = "default", features = ["test", "typing"]}
-test = { features = ["test"], solve-group = "default" }
-typing = { features = ["test", "typing"], solve-group = "default" }
-py310 = { features = ["py310", "test"]}
-py311 = { features = ["py311", "test"]}
-py312 = { features = ["py312", "test"]}
-py313 = { features = ["py313", "test"]}
-py314 = { features = ["py314", "test"]}
-
-[tool.pixi.feature.py310.dependencies]
-python = "3.10.*"
-[tool.pixi.feature.py311.dependencies]
-python = "3.11.*"
-[tool.pixi.feature.py312.dependencies]
-python = "3.12.*"
-[tool.pixi.feature.py313.dependencies]
-python = "3.13.*"
-[tool.pixi.feature.py314.dependencies]
-python = "3.14.*"
-
-[tool.pixi.feature.test.target.linux-64.dependencies]
-julia = ">=1.0.0"
-
-[tool.pixi.feature.test.target.osx-64.dependencies]
-julia = ">=1.0.0"
-
-[tool.pixi.feature.test.tasks]
-setup-julia = "julia --project=. --eval 'import Pkg; Pkg.instantiate()'"
-test = { cmd = "pytest --cov src --cov tests", depends-on = ["setup-julia"] }
-
-[tool.pixi.feature.typing.dependencies]
-ty = ">=0.0.7"
-
-[tool.pixi.feature.typing.tasks]
-typing = "ty check --python .pixi/envs/typing src/ tests/"

From 4703ae7b4a33834011304884e6b8b4e4b427b1ce Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Tue, 30 Dec 2025 19:12:42 +0100
Subject: [PATCH 2/9] Update changelog for uv switch

---
 CHANGES.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CHANGES.md b/CHANGES.md
index f62891b..01a5b84 100644
--- a/CHANGES.md
+++ b/CHANGES.md
@@ -7,7 +7,7 @@ releases are available on [PyPI](https://pypi.org/project/pytask-julia) and
 
 ## 0.x.x - 2024-xx-xx
 
-- {pull}`??` switches CI and development tooling from pixi to uv.
+- {pull}`64` switches CI and development tooling from pixi to uv.
 - {pull}`62` removes tox in favor of pixi for typing.
 - {pull}`56` updates pre-commit hooks.
 - {pull}`54` drops support for Python 3.8 and 3.9 and adds support for Python 3.14.

From 754c50301cc2680e21bdb23e0cfa663fded8d18c Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Tue, 30 Dec 2025 19:16:00 +0100
Subject: [PATCH 3/9] Fix uv on Windows CI

---
 .github/workflows/main.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 0fb04d4..12e6669 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -55,7 +55,6 @@ jobs:
       # Unit, integration, and end-to-end tests.
 
       - name: Run unit tests and doctests.
-        shell: bash -l {0}
         run: uv run --extra test pytest -m "unit or (not integration and not end_to_end)" --cov src --cov tests --cov-report=xml -n auto
 
       - name: Upload unit test coverage reports to Codecov with GitHub Action
@@ -64,7 +63,6 @@ jobs:
           flags: unit
 
       - name: Run end-to-end tests.
-        shell: bash -l {0}
         run: uv run --extra test pytest -m end_to_end --cov src --cov tests --cov-report=xml -n auto
 
       - name: Upload end_to_end test coverage reports to Codecov with GitHub Action

From dde980e7e8367deefbc5ad09e13b87ad0c784909 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Tue, 30 Dec 2025 20:47:46 +0100
Subject: [PATCH 4/9] Add uv lockfile

---
 .gitignore              |   2 -
 .pre-commit-config.yaml |   1 +
 uv.lock                 | 797 ++++++++++++++++++++++++++++++++++++++++
 3 files changed, 798 insertions(+), 2 deletions(-)
 create mode 100644 uv.lock

diff --git a/.gitignore b/.gitignore
index 5e89bcb..d1f684e 100644
--- a/.gitignore
+++ b/.gitignore
@@ -22,6 +22,4 @@ src/pytask_julia/_version.py
 .ruff_cache
 .pytest_cache
 
-# pixi environments
-.pixi
 *.egg-info
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index e6928a3..c7f9537 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -4,6 +4,7 @@ repos:
     hooks:
     -   id: check-added-large-files
         args: ['--maxkb=25']
+        exclude: ^uv\.lock$
     -   id: check-case-conflict
     -   id: check-merge-conflict
     -   id: check-vcs-permalinks
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 0000000..3d22dfe
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,797 @@
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+revision = 3
+requires-python = ">=3.10"
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+    { url = "https://files.pythonhosted.org/packages/14/f7/ff97f37f0a75db9495ddbc47738ec4339837867c4bfa145bdcfbd0d1eb2f/ty-0.0.8-py3-none-win32.whl", hash = "sha256:d7f460ad6fc9325e9cc8ea898949bbd88141b4609d1088d7ede02ce2ef06e776", size = 9254675, upload-time = "2025-12-29T13:50:33.35Z" },
+    { url = "https://files.pythonhosted.org/packages/af/51/eba5d83015e04630002209e3590c310a0ff1d26e1815af204a322617a42e/ty-0.0.8-py3-none-win_amd64.whl", hash = "sha256:1641fb8dedc3d2da43279d21c3c7c1f80d84eae5c264a1e8daa544458e433c19", size = 10131382, upload-time = "2025-12-29T13:50:13.719Z" },
+    { url = "https://files.pythonhosted.org/packages/38/1c/0d8454ff0f0f258737ecfe84f6e508729191d29663b404832f98fa5626b7/ty-0.0.8-py3-none-win_arm64.whl", hash = "sha256:ec74f022f315bede478ecae1277a01ab618e6500c1d68450d7883f5cd6ed554a", size = 9636374, upload-time = "2025-12-29T13:50:16.344Z" },
+]
+
+[[package]]
+name = "typing-extensions"
+version = "4.15.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/72/94/1a15dd82efb362ac84269196e94cf00f187f7ed21c242792a923cdb1c61f/typing_extensions-4.15.0.tar.gz", hash = "sha256:0cea48d173cc12fa28ecabc3b837ea3cf6f38c6d1136f85cbaaf598984861466", size = 109391, upload-time = "2025-08-25T13:49:26.313Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/18/67/36e9267722cc04a6b9f15c7f3441c2363321a3ea07da7ae0c0707beb2a9c/typing_extensions-4.15.0-py3-none-any.whl", hash = "sha256:f0fa19c6845758ab08074a0cfa8b7aecb71c999ca73d62883bc25cc018c4e548", size = 44614, upload-time = "2025-08-25T13:49:24.86Z" },
+]
+
+[[package]]
+name = "universal-pathlib"
+version = "0.3.7"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "fsspec" },
+    { name = "pathlib-abc" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/d5/96/b58b00ce27cbc37fd3c79944438dd8630d2c39f9467c9e73e1a4a3eec1ef/universal_pathlib-0.3.7.tar.gz", hash = "sha256:36331056fa59a7d7cd3b61b4045f3a3418f446f23ec1a01d281c4510814b4b05", size = 253466, upload-time = "2025-12-03T00:06:43.859Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/79/77/53c2d3a0413bc55b4c91067a0c41e55451be9b0784d204e4e46ce5abf668/universal_pathlib-0.3.7-py3-none-any.whl", hash = "sha256:fb95117b20b5981f86ef9d887fddbf9c61d3596634ba42cccea444931d87c201", size = 80738, upload-time = "2025-12-03T00:06:41.997Z" },
+]

From cc4ac6fc3852b02a32ce73ab62359b08ac8fc0e6 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Tue, 30 Dec 2025 20:55:32 +0100
Subject: [PATCH 5/9] Use dependency groups

---
 .github/workflows/main.yml |  6 +++---
 pyproject.toml             |  2 +-
 uv.lock                    | 27 ++++++++++++++++-----------
 3 files changed, 20 insertions(+), 15 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 12e6669..b10770c 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -27,7 +27,7 @@ jobs:
         with:
           enable-cache: true
       - name: Run type checking
-        run: uv run --extra test --extra typing ty check src/ tests/
+        run: uv run --group test --group typing ty check src/ tests/
 
   run-tests:
 
@@ -55,7 +55,7 @@ jobs:
       # Unit, integration, and end-to-end tests.
 
       - name: Run unit tests and doctests.
-        run: uv run --extra test pytest -m "unit or (not integration and not end_to_end)" --cov src --cov tests --cov-report=xml -n auto
+        run: uv run --group test pytest -m "unit or (not integration and not end_to_end)" --cov src --cov tests --cov-report=xml -n auto
 
       - name: Upload unit test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5
@@ -63,7 +63,7 @@ jobs:
           flags: unit
 
       - name: Run end-to-end tests.
-        run: uv run --extra test pytest -m end_to_end --cov src --cov tests --cov-report=xml -n auto
+        run: uv run --group test pytest -m end_to_end --cov src --cov tests --cov-report=xml -n auto
 
       - name: Upload end_to_end test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5
diff --git a/pyproject.toml b/pyproject.toml
index 09de93d..7fdff30 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -33,7 +33,7 @@ Tracker = "https://github.com/pytask-dev/pytask-julia/issues"
 [project.entry-points.pytask]
 pytask_julia = "pytask_julia.plugin"
 
-[project.optional-dependencies]
+[dependency-groups]
 test = ["pytask-parallel", "pytest", "pytest-cov", "pytest-xdist", "pyyaml"]
 typing = ["pyyaml", "ty>=0.0.7"]
 
diff --git a/uv.lock b/uv.lock
index 3d22dfe..773b31e 100644
--- a/uv.lock
+++ b/uv.lock
@@ -167,7 +167,7 @@ name = "exceptiongroup"
 version = "1.3.1"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
-    { name = "typing-extensions", marker = "python_full_version < '3.13'" },
+    { name = "typing-extensions", marker = "python_full_version < '3.11'" },
 ]
 sdist = { url = "https://files.pythonhosted.org/packages/50/79/66800aadf48771f6b62f7eb014e352e5d06856655206165d775e675a02c9/exceptiongroup-1.3.1.tar.gz", hash = "sha256:8b412432c6055b0b7d14c310000ae93352ed6754f70fa8f7c34141f91c4e3219", size = 30371, upload-time = "2025-11-21T23:01:54.787Z" }
 wheels = [
@@ -483,7 +483,7 @@ dependencies = [
     { name = "pytask" },
 ]
 
-[package.optional-dependencies]
+[package.dev-dependencies]
 test = [
     { name = "pytask-parallel" },
     { name = "pytest" },
@@ -501,15 +501,20 @@ requires-dist = [
     { name = "click" },
     { name = "pluggy", specifier = ">=1.0.0" },
     { name = "pytask", specifier = ">=0.4.5" },
-    { name = "pytask-parallel", marker = "extra == 'test'" },
-    { name = "pytest", marker = "extra == 'test'" },
-    { name = "pytest-cov", marker = "extra == 'test'" },
-    { name = "pytest-xdist", marker = "extra == 'test'" },
-    { name = "pyyaml", marker = "extra == 'test'" },
-    { name = "pyyaml", marker = "extra == 'typing'" },
-    { name = "ty", marker = "extra == 'typing'", specifier = ">=0.0.7" },
-]
-provides-extras = ["test", "typing"]
+]
+
+[package.metadata.requires-dev]
+test = [
+    { name = "pytask-parallel" },
+    { name = "pytest" },
+    { name = "pytest-cov" },
+    { name = "pytest-xdist" },
+    { name = "pyyaml" },
+]
+typing = [
+    { name = "pyyaml" },
+    { name = "ty", specifier = ">=0.0.7" },
+]
 
 [[package]]
 name = "pytask-parallel"

From 677bdf53833508878f6f9616a45ccfb1650de1e2 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Tue, 30 Dec 2025 22:34:52 +0100
Subject: [PATCH 6/9] Add justfile

---
 justfile | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)
 create mode 100644 justfile

diff --git a/justfile b/justfile
new file mode 100644
index 0000000..46b6b8d
--- /dev/null
+++ b/justfile
@@ -0,0 +1,22 @@
+# Install all dependencies
+install:
+    uv sync --all-groups
+
+# Run tests
+test *FLAGS:
+    uv run --group test pytest {{FLAGS}}
+
+# Run tests with coverage
+test-cov *FLAGS:
+    uv run --group test pytest --cov=src --cov=tests --cov-report=xml -n auto {{FLAGS}}
+
+# Run type checking
+typing:
+    uv run --group typing --group test ty check src/ tests/
+
+# Run linting
+lint:
+    uvx prek run -a
+
+# Run all checks (format, lint, typing, test)
+check: lint typing test

From a78a03ef5cb04728c3521865534c8f327a3ba387 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Tue, 30 Dec 2025 22:41:24 +0100
Subject: [PATCH 7/9] Use just in CI

---
 .github/workflows/main.yml | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index b10770c..3510f9c 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -26,8 +26,10 @@ jobs:
       - uses: astral-sh/setup-uv@v7
         with:
           enable-cache: true
+      - name: Install just
+        uses: extractions/setup-just@v3
       - name: Run type checking
-        run: uv run --group test --group typing ty check src/ tests/
+        run: just typing
 
   run-tests:
 
@@ -51,11 +53,13 @@ jobs:
           enable-cache: true
       - name: Install Julia dependencies
         run: julia --project=. --eval 'import Pkg; Pkg.instantiate()'
+      - name: Install just
+        uses: extractions/setup-just@v3
 
       # Unit, integration, and end-to-end tests.
 
       - name: Run unit tests and doctests.
-        run: uv run --group test pytest -m "unit or (not integration and not end_to_end)" --cov src --cov tests --cov-report=xml -n auto
+        run: just test-cov -m "unit or (not integration and not end_to_end)"
 
       - name: Upload unit test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5
@@ -63,7 +67,7 @@ jobs:
           flags: unit
 
       - name: Run end-to-end tests.
-        run: uv run --group test pytest -m end_to_end --cov src --cov tests --cov-report=xml -n auto
+        run: just test-cov -m end_to_end
 
       - name: Upload end_to_end test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5

From 48392d601ad7fcee99e6cde8b0a498e473be12fd Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Tue, 30 Dec 2025 22:45:24 +0100
Subject: [PATCH 8/9] Add just test recipes

---
 .github/workflows/main.yml | 4 ++--
 justfile                   | 8 ++++++++
 2 files changed, 10 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 3510f9c..a3e48eb 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -59,7 +59,7 @@ jobs:
       # Unit, integration, and end-to-end tests.
 
       - name: Run unit tests and doctests.
-        run: just test-cov -m "unit or (not integration and not end_to_end)"
+        run: just test-unit
 
       - name: Upload unit test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5
@@ -67,7 +67,7 @@ jobs:
           flags: unit
 
       - name: Run end-to-end tests.
-        run: just test-cov -m end_to_end
+        run: just test-e2e
 
       - name: Upload end_to_end test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5
diff --git a/justfile b/justfile
index 46b6b8d..e259eab 100644
--- a/justfile
+++ b/justfile
@@ -10,6 +10,14 @@ test *FLAGS:
 test-cov *FLAGS:
     uv run --group test pytest --cov=src --cov=tests --cov-report=xml -n auto {{FLAGS}}
 
+# Run unit tests and doctests with coverage
+test-unit:
+    uv run --group test pytest -m "unit or (not integration and not end_to_end)" --cov=src --cov=tests --cov-report=xml -n auto
+
+# Run end-to-end tests with coverage
+test-e2e:
+    uv run --group test pytest -m end_to_end --cov=src --cov=tests --cov-report=xml -n auto
+
 # Run type checking
 typing:
     uv run --group typing --group test ty check src/ tests/

From bd03613d021558a72215926d1b98908901cf1c20 Mon Sep 17 00:00:00 2001
From: Tobias Raabe <raabe@posteo.de>
Date: Tue, 30 Dec 2025 23:36:40 +0100
Subject: [PATCH 9/9] Remove pytest markers

---
 .github/workflows/main.yml              | 18 +++---------------
 justfile                                |  8 --------
 pyproject.toml                          |  4 ----
 tests/test_collect.py                   |  2 --
 tests/test_config.py                    |  2 --
 tests/test_execute.py                   | 10 ----------
 tests/test_normal_execution_w_plugin.py |  1 -
 tests/test_parallel.py                  |  2 --
 tests/test_parametrize.py               |  2 --
 tests/test_shared.py                    |  1 -
 10 files changed, 3 insertions(+), 47 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index a3e48eb..0d75edd 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -56,20 +56,8 @@ jobs:
       - name: Install just
         uses: extractions/setup-just@v3
 
-      # Unit, integration, and end-to-end tests.
+      - name: Run tests
+        run: just test-cov
 
-      - name: Run unit tests and doctests.
-        run: just test-unit
-
-      - name: Upload unit test coverage reports to Codecov with GitHub Action
-        uses: codecov/codecov-action@v5
-        with:
-          flags: unit
-
-      - name: Run end-to-end tests.
-        run: just test-e2e
-
-      - name: Upload end_to_end test coverage reports to Codecov with GitHub Action
+      - name: Upload test coverage reports to Codecov with GitHub Action
         uses: codecov/codecov-action@v5
-        with:
-          flags: end_to_end
diff --git a/justfile b/justfile
index e259eab..46b6b8d 100644
--- a/justfile
+++ b/justfile
@@ -10,14 +10,6 @@ test *FLAGS:
 test-cov *FLAGS:
     uv run --group test pytest --cov=src --cov=tests --cov-report=xml -n auto {{FLAGS}}
 
-# Run unit tests and doctests with coverage
-test-unit:
-    uv run --group test pytest -m "unit or (not integration and not end_to_end)" --cov=src --cov=tests --cov-report=xml -n auto
-
-# Run end-to-end tests with coverage
-test-e2e:
-    uv run --group test pytest -m end_to_end --cov=src --cov=tests --cov-report=xml -n auto
-
 # Run type checking
 typing:
     uv run --group typing --group test ty check src/ tests/
diff --git a/pyproject.toml b/pyproject.toml
index 7fdff30..ec13818 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -104,9 +104,5 @@ unused-ignore-comment = "ignore"
 [tool.pytest.ini_options]
 testpaths = ["src", "tests"]
 markers = [
-    "wip: Tests that are work-in-progress.",
-    "unit: Flag for unit tests which target mainly a single function.",
-    "integration: Flag for integration tests which may comprise of multiple unit tests.",
-    "end_to_end: Flag for tests that cover the whole program.",
 ]
 norecursedirs = [".idea"]
diff --git a/tests/test_collect.py b/tests/test_collect.py
index 53a3e35..352b08a 100644
--- a/tests/test_collect.py
+++ b/tests/test_collect.py
@@ -11,7 +11,6 @@
 from tests.conftest import ROOT
 
 
-@pytest.mark.unit
 @pytest.mark.parametrize(
     (
         "mark",
@@ -91,7 +90,6 @@ def test_parse_julia_mark(  # noqa: PLR0913
         assert out == expected
 
 
-@pytest.mark.unit
 @pytest.mark.parametrize(
     ("project", "root", "expected"),
     [
diff --git a/tests/test_config.py b/tests/test_config.py
index b6adf01..b27a129 100644
--- a/tests/test_config.py
+++ b/tests/test_config.py
@@ -1,10 +1,8 @@
 from __future__ import annotations
 
-import pytest
 from pytask import build
 
 
-@pytest.mark.end_to_end
 def test_marker_is_configured(tmp_path):
     session = build(paths=tmp_path)
     assert "julia" in session.config["markers"]
diff --git a/tests/test_execute.py b/tests/test_execute.py
index c57b17a..34f468f 100644
--- a/tests/test_execute.py
+++ b/tests/test_execute.py
@@ -19,7 +19,6 @@
 from tests.conftest import parametrize_parse_code_serializer_suffix
 
 
-@pytest.mark.unit
 def test_pytask_execute_task_setup_missing_julia(monkeypatch):
     """Make sure that the task setup raises errors."""
     # Act like julia is installed since we do not test this.
@@ -38,7 +37,6 @@ def test_pytask_execute_task_setup_missing_julia(monkeypatch):
 
 
 @needs_julia
-@pytest.mark.end_to_end
 @parametrize_parse_code_serializer_suffix
 @pytest.mark.parametrize(
     "depends_on",
@@ -92,7 +90,6 @@ def task_run_jl_script(
 
 
 @needs_julia
-@pytest.mark.end_to_end
 @parametrize_parse_code_serializer_suffix
 def test_run_jl_script_w_task_decorator(
     runner, tmp_path, parse_config_code, serializer, suffix
@@ -130,7 +127,6 @@ def run_jl_script(produces=Path("out.txt")):
 
 
 @needs_julia
-@pytest.mark.end_to_end
 @parametrize_parse_code_serializer_suffix
 def test_raise_error_if_julia_is_not_found(
     tmp_path,
@@ -178,7 +174,6 @@ def task_run_jl_script(produces=Path("out.txt")):
 
 
 @needs_julia
-@pytest.mark.end_to_end
 @parametrize_parse_code_serializer_suffix
 def test_run_jl_script_w_wrong_cmd_option(
     runner,
@@ -217,7 +212,6 @@ def task_run_jl_script(produces=Path("out.txt")):
 
 
 @needs_julia
-@pytest.mark.end_to_end
 @pytest.mark.parametrize("n_threads", [2, 3])
 @parametrize_parse_code_serializer_suffix
 def test_check_passing_cmd_line_options(  # noqa: PLR0913
@@ -258,7 +252,6 @@ def task_run_jl_script(produces=Path("out.txt")):
 
 
 @needs_julia
-@pytest.mark.end_to_end
 @pytest.mark.xfail(
     condition=sys.platform == "win32" and os.environ.get("CI") == "true",
     reason="Test folder and repo are on different drives causing relpath to fail.",
@@ -312,7 +305,6 @@ def task_run_jl_script(produces=Path("out.txt")):
 
 
 @needs_julia
-@pytest.mark.end_to_end
 @pytest.mark.xfail(
     condition=sys.platform == "win32" and os.environ.get("CI") == "true",
     reason="Test folder and repo are on different drives causing relpath to fail.",
@@ -358,7 +350,6 @@ def task_run_jl_script(produces=Path("out.txt")):
 
 
 @needs_julia
-@pytest.mark.end_to_end
 def test_run_jl_script_w_custom_serializer(runner, tmp_path):
     task_source = f"""
     import pytask
@@ -391,7 +382,6 @@ def task_run_jl_script(produces=Path("out.txt")):
 
 
 @needs_julia
-@pytest.mark.end_to_end
 def test_run_jl_script_fails_w_multiple_markers(runner, tmp_path):
     task_source = """
     import pytask
diff --git a/tests/test_normal_execution_w_plugin.py b/tests/test_normal_execution_w_plugin.py
index bc83230..a6eadc4 100644
--- a/tests/test_normal_execution_w_plugin.py
+++ b/tests/test_normal_execution_w_plugin.py
@@ -9,7 +9,6 @@
 from pytask import cli
 
 
-@pytest.mark.end_to_end
 @pytest.mark.parametrize(
     "dependencies",
     [(), ("in.txt",), ("in_1.txt", "in_2.txt")],
diff --git a/tests/test_parallel.py b/tests/test_parallel.py
index c450738..7e2a49d 100644
--- a/tests/test_parallel.py
+++ b/tests/test_parallel.py
@@ -27,7 +27,6 @@
 
 
 @needs_julia
-@pytest.mark.end_to_end
 @parametrize_parse_code_serializer_suffix
 def test_parallel_parametrization_over_source_files_w_loop(
     runner,
@@ -76,7 +75,6 @@ def task_execute_julia(produces=Path(f"{{i}}.csv")):
 
 
 @needs_julia
-@pytest.mark.end_to_end
 @parametrize_parse_code_serializer_suffix
 def test_parallel_parametrization_over_source_file_w_loop(
     runner,
diff --git a/tests/test_parametrize.py b/tests/test_parametrize.py
index 9ff6ed6..178fa6a 100644
--- a/tests/test_parametrize.py
+++ b/tests/test_parametrize.py
@@ -2,7 +2,6 @@
 
 import textwrap
 
-import pytest
 from pytask import ExitCode
 from pytask import cli
 
@@ -12,7 +11,6 @@
 
 
 @needs_julia
-@pytest.mark.end_to_end
 @parametrize_parse_code_serializer_suffix
 def test_parametrized_execution_of_jl_script_w_loop(
     runner,
diff --git a/tests/test_shared.py b/tests/test_shared.py
index d9f9bb4..e2b1dc2 100644
--- a/tests/test_shared.py
+++ b/tests/test_shared.py
@@ -7,7 +7,6 @@
 from pytask_julia.shared import julia
 
 
-@pytest.mark.unit
 @pytest.mark.parametrize(
     ("args", "kwargs", "expectation", "expected"),
     [