From 5474819ebf7a440567a0c0aada1a51ea3e2c7370 Mon Sep 17 00:00:00 2001 From: Donald Campbell <125581724+donaldcampbelljr@users.noreply.github.com> Date: Mon, 6 Oct 2025 12:56:52 -0600 Subject: [PATCH] add clairty on looper check --- docs/looper/how-to/rerun.md | 17 ++++++++++++++++- mkdocs.yml | 2 +- 2 files changed, 17 insertions(+), 2 deletions(-) diff --git a/docs/looper/how-to/rerun.md b/docs/looper/how-to/rerun.md index c35cf974..7060693b 100644 --- a/docs/looper/how-to/rerun.md +++ b/docs/looper/how-to/rerun.md @@ -34,8 +34,23 @@ currentPipestatManager.set_status(record_identifier="sample2", status_identifier ``` More info on setting status can be found [here](../developer-tutorial/developer-pipestat.md#setting-and-checking-status). +Now that your pipeline is setting statuses, you can check the status of all samples using: +```shell +looper check +``` +This command will show you a list of samples and their associated status,e.g: + +``` + 'count_lines' pipeline status summary +┏━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ +┃ Status ┃ Jobs count/total jobs ┃ +┡━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩ +│ completed │ 1/3 │ +│ failed │ 2/3 │ +└───────────────┴─────────────────────────────┘ +``` -Now that your pipeline is setting statuses, you can resubmit failed jobs with: +You can resubmit all failed jobs with: ```shell looper rerun ``` diff --git a/mkdocs.yml b/mkdocs.yml index 122e42d4..5b12fc8f 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -153,7 +153,7 @@ nav: - Running project-level pipelines: looper/how-to/project-level-pipelines.md - Link similar results: looper/how-to/link-objects.md - Report objects: looper/how-to/report-objects.md - - Rerun samples: looper/how-to/rerun.md + - Check status and rerun samples: looper/how-to/rerun.md - Pipeline Developer Docs: - Developer tutorial: - Writing a pipeline interface: looper/developer-tutorial/writing-a-pipeline-interface.md