From e697bfc81409b3a4eb5d08d8bfc3d0b0a760d560 Mon Sep 17 00:00:00 2001 From: Luke Zappia Date: Tue, 2 Sep 2025 14:14:59 +0200 Subject: [PATCH 1/3] Update repositories --- _viash.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/_viash.yaml b/_viash.yaml index b3fa2d6..20c94d7 100644 --- a/_viash.yaml +++ b/_viash.yaml @@ -80,9 +80,9 @@ config_mods: | .runners[.type == "nextflow"].config.labels := { lowmem : "memory = 20.Gb", midmem : "memory = 50.Gb", highmem : "memory = 100.Gb", lowcpu : "cpus = 5", midcpu : "cpus = 15", highcpu : "cpus = 30", lowtime : "time = 1.h", midtime : "time = 4.h", hightime : "time = 8.h", veryhightime : "time = 24.h" } repositories: - - name: op + - name: openproblems type: github repo: openproblems-bio/openproblems - tag: build/main # Step 8: Set this to the latest release + tag: build/main # Step 8: Set this to the latest release # Step 9: High five yourself! From bc9961ff27cf2c89af77c4c7aadf471d59fa0e09 Mon Sep 17 00:00:00 2001 From: Luke Zappia Date: Tue, 2 Sep 2025 14:16:30 +0200 Subject: [PATCH 2/3] Fix whitespace --- _viash.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_viash.yaml b/_viash.yaml index 20c94d7..c171bca 100644 --- a/_viash.yaml +++ b/_viash.yaml @@ -83,6 +83,6 @@ repositories: - name: openproblems type: github repo: openproblems-bio/openproblems - tag: build/main # Step 8: Set this to the latest release + tag: build/main # Step 8: Set this to the latest release # Step 9: High five yourself! From 778da7932f4a3dde4f473d9e09f034656aca15f7 Mon Sep 17 00:00:00 2001 From: Robrecht Cannoodt Date: Tue, 2 Sep 2025 17:04:06 +0200 Subject: [PATCH 3/3] fix dependency --- src/workflows/run_benchmark/config.vsh.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/workflows/run_benchmark/config.vsh.yaml b/src/workflows/run_benchmark/config.vsh.yaml index ba1e167..4c1602d 100644 --- a/src/workflows/run_benchmark/config.vsh.yaml +++ b/src/workflows/run_benchmark/config.vsh.yaml @@ -63,7 +63,7 @@ resources: dependencies: - name: utils/extract_uns_metadata - repository: op + repository: openproblems - name: control_methods/true_labels - name: methods/logistic_regression - name: metrics/accuracy