From b9014f22cf2c9a694c2d3710df1128b52aa9d550 Mon Sep 17 00:00:00 2001 From: LouisK92 Date: Sat, 13 Dec 2025 15:07:05 +0100 Subject: [PATCH 1/2] Change order of installs in cellpose and watershed --- src/methods_segmentation/cellpose/config.vsh.yaml | 2 +- src/methods_segmentation/watershed/config.vsh.yaml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/src/methods_segmentation/cellpose/config.vsh.yaml b/src/methods_segmentation/cellpose/config.vsh.yaml index 4d9c5a2a..f43d741b 100644 --- a/src/methods_segmentation/cellpose/config.vsh.yaml +++ b/src/methods_segmentation/cellpose/config.vsh.yaml @@ -85,8 +85,8 @@ engines: - type: python pypi: cellpose<4.0.0 __merge__: - - /src/base/setup_spatialdata_partial.yaml - /src/base/setup_txsim_partial.yaml + - /src/base/setup_spatialdata_partial.yaml - type: native runners: diff --git a/src/methods_segmentation/watershed/config.vsh.yaml b/src/methods_segmentation/watershed/config.vsh.yaml index 0147f06a..fb17c4b9 100644 --- a/src/methods_segmentation/watershed/config.vsh.yaml +++ b/src/methods_segmentation/watershed/config.vsh.yaml @@ -165,8 +165,8 @@ engines: - type: docker image: openproblems/base_python:1 __merge__: - - /src/base/setup_spatialdata_partial.yaml - /src/base/setup_txsim_partial.yaml + - /src/base/setup_spatialdata_partial.yaml - type: native runners: From bfddcba01aa3c88f859fdde277d9611f55f9b232 Mon Sep 17 00:00:00 2001 From: LouisK92 Date: Sat, 13 Dec 2025 15:18:16 +0100 Subject: [PATCH 2/2] Change install order for pciseq --- src/methods_transcript_assignment/pciseq/config.vsh.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/methods_transcript_assignment/pciseq/config.vsh.yaml b/src/methods_transcript_assignment/pciseq/config.vsh.yaml index 1cbfefbc..21a2afdf 100644 --- a/src/methods_transcript_assignment/pciseq/config.vsh.yaml +++ b/src/methods_transcript_assignment/pciseq/config.vsh.yaml @@ -151,8 +151,8 @@ engines: - type: docker image: openproblems/base_python:1 __merge__: - - /src/base/setup_spatialdata_partial.yaml - /src/base/setup_txsim_partial.yaml + - /src/base/setup_spatialdata_partial.yaml setup: - type: python github: [acycliq/pciSeq@issue_14]