diff --git a/src/methods/scprint/config.vsh.yaml b/src/methods/scprint/config.vsh.yaml index 0e3020e5..cd10ef6c 100644 --- a/src/methods/scprint/config.vsh.yaml +++ b/src/methods/scprint/config.vsh.yaml @@ -33,14 +33,14 @@ info: method_types: [embedding] variants: scprint_large: - model_name: "large" + model_name: "large-v1" scprint_medium: - model_name: "v2-medium" + model_name: "medium-v1.5" scprint_small: - model_name: "small" + model_name: "small-v1" test_setup: run: - model_name: small + model_name: small-v1 batch_size: 16 max_len: 100 @@ -48,8 +48,8 @@ arguments: - name: "--model_name" type: "string" description: Which model to use. Not used if --model is provided. - choices: ["large", "v2-medium", "small"] - default: "v2-medium" + choices: ["large-v1", "medium-v1.5", "small-v1"] + default: "medium-v1.5" - name: --model type: file description: Path to the scPRINT model. @@ -61,7 +61,7 @@ arguments: - name: --max_len type: integer description: The maximum length of the gene sequence. - default: 4000 + default: 2300 resources: - type: python_script diff --git a/src/methods/scprint/script.py b/src/methods/scprint/script.py index 46297afa..b26aa79f 100644 --- a/src/methods/scprint/script.py +++ b/src/methods/scprint/script.py @@ -14,7 +14,7 @@ par = { "input": "resources_test/task_batch_integration/cxg_immune_cell_atlas/dataset.h5ad", "output": "output.h5ad", - "model_name": "v2-medium", + "model_name": "medium-v1.5", "model": None, } meta = {"name": "scprint"}