diff --git a/src/curation/upheno-config.yaml b/src/curation/upheno-config.yaml index 2799d729..a3c3cb12 100644 --- a/src/curation/upheno-config.yaml +++ b/src/curation/upheno-config.yaml @@ -10,11 +10,11 @@ robot_java_args: -Xmx10G java_opts: -Xmx10G timeout_external_processes: 120m working_directory: /work/src -overwrite_matches: False +overwrite_matches: True skip_pattern_download: True max_upheno_id: 9999999 min_upheno_id: 500 -overwrite_ontologies: True +overwrite_ontologies: False overwrite_upheno_intermediate: True match_owl_thing: False allow_non_upheno_eq: False @@ -177,7 +177,6 @@ sources: class_hierarchy: asserted dependencies: - nbo - - pr - chebi - cl - mpath @@ -190,7 +189,6 @@ sources: modifier: PATO:0000460 dependencies: - nbo - - pr - chebi - hsapdv - cl @@ -341,40 +339,17 @@ common_dependencies: - pato - ro - iao - - ncbitaxon - - envo species_modules: - mp - hp - - wbphenotype - - xpo - - dpo - - planp - zp - - ddpheno - - fypo - - phipo - - mgpo - - apo + - wbphenotype upheno_profiles: - id: mp-hp species_modules: - mp - hp - - id: all - species_modules: - - mp - - hp - wbphenotype - - xpo - - dpo - - planp - - zp - - ddpheno - - fypo - - phipo - - mgpo - - apo pattern_repos: - obophenotype/upheno/contents/src/patterns/dosdp-dev - obophenotype/upheno/contents/src/patterns/dosdp-patterns