Merge tag '20.0.2'

Merge notes:

* Fix gh-2014 appears to have been made unnecessary by gh-2018.

Tag message:

20.0.2 (March 6, 2020)
======================
A bug squashing release in the 20.0.x series.

This release fixes the use of custom templates within the docker wrapper, remedies crashes
when FreeSurfer HOME was not set, and improves the documentation for local installations.

With thanks to Blaise Frederick for the contribution.

  * DOC: Update standalone installation requirements (#2009)
  * FIX: Crashes whenever FREESURFER_HOME is not set (#2014)
  * FIX: Local template mounting (wrapper) (#2020)
  * MAINT: Pin minor series of nipype, major series of nibabel (#2021)

Author: effigies

.mailmap

@@ -7,6 +7,8 @@ Asier Erramuzpe <asier.erramuzpe@gmail.com>
 Basille Pinsard <basile.pinsard@umontreal.ca>
 Basille Pinsard <basile.pinsard@umontreal.ca> basile <basile.pinsard@gmail.com>
 Basille Pinsard <basile.pinsard@umontreal.ca> <bpinsard@imed.jussieu.fr>
+Blaise Frederick <blaise.frederick@gmail.com>
+Blaise Frederick <blaise.frederick@gmail.com> bbfrederick <blaise.frederick@gmail.com>
 Christopher J. Markiewicz <effigies@gmail.com>
 Christopher J. Markiewicz <effigies@gmail.com> <effigies@bu.edu>
 Christopher J. Markiewicz <effigies@gmail.com> <markiewicz@stanford.edu>

.zenodo.json

@@ -74,6 +74,12 @@
       "orcid": "0000-0001-7644-7915",
       "type": "Researcher"
     },
+    {
+      "affiliation": "McLean Hospital Brain Imaging Center, MA, USA",
+      "name": "Frederick, Blaise B.",
+      "orcid": "0000-0001-5832-5279",
+      "type": "Researcher"
+    },
     {
       "affiliation": "Department of Psychiatry, McGill University",
       "name": "Devenyi, Grabriel A.",

CHANGES.rst

@@ -1,3 +1,17 @@
+20.0.2 (March 6, 2020)
+======================
+A bug squashing release in the 20.0.x series.
+
+This release fixes the use of custom templates within the docker wrapper, remedies crashes
+when FreeSurfer HOME was not set, and improves the documentation for local installations.
+
+With thanks to Blaise Frederick for the contribution.
+
+  * DOC: Update standalone installation requirements (#2009)
+  * FIX: Crashes whenever FREESURFER_HOME is not set (#2014)
+  * FIX: Local template mounting (wrapper) (#2020)
+  * MAINT: Pin minor series of nipype, major series of nibabel (#2021)
+
 20.0.1 (February 27, 2020)
 ==========================
 Bug-fix release in 20.0.x series.

setup.cfg

@@ -20,8 +20,8 @@ classifiers =
 python_requires = >=3.7
 install_requires =
     indexed_gzip >= 0.8.8
-    nibabel >= 3.0.1
-    nipype >= 1.3.1
+    nibabel ~= 3.0
+    nipype ~= 1.4.0
     nitime
     niworkflows @ git+https://github.com/nipreps/niworkflows.git@76f831f1f8fbf6c277fdf92535639bbf11d84527
     numpy

wrapper/fmriprep_docker.py

@@ -427,9 +427,12 @@ def main():
         spaces = []
         for space in opts.output_spaces:
             if space.split(':')[0] not in (TF_TEMPLATES + NONSTANDARD_REFERENCES):
-                target = '/imports/' + os.path.basename(space)
+                tpl = os.path.basename(space)
+                if not tpl.startswith('tpl-'):
+                    raise RuntimeError("Custom template %s requires a `tpl-` prefix" % tpl)
+                target = '/home/fmriprep/.cache/templateflow/' + tpl
                 command.extend(['-v', ':'.join((os.path.abspath(space), target, 'ro'))])
-                spaces.append(target)
+                spaces.append(tpl[4:])
             else:
                 spaces.append(space)
         unknown_args.extend(['--output-spaces'] + spaces)