pathogen-repo-build: Long runtimes for "Setup runtime docker"

[joverlee521]

Over the last couple weeks, I noticed some failures in our pathogen GH Action workflows that were abnormally long. These were stuck on the setup runtime step of the pathogen-repo-build workflow for hours pulling the docker image before ultimately failing.

Examples:

• seasonal-cov ingest failed after 5h59m
• zika ingest failed after 5h51m
• rabies ingest failed after 2h16m
• mumps ingest failed after 1h47m
• measles ingest failed after 3h13m

I'm not sure what's causing the delay in pulling the docker image (network issues?), but we should probably guard against these long running jobs with timeout-minutes.

I don't see a built-in way to set timeout-minutes for composite actions so we could

1. add the timeout command to setup-nextstrain-cli
2. add timeout-minutes to workflows that use setup-nextstrain-cli