TypeError funannotate2 train Choosing best augustus species based on taxonomy #33
Description
Hi,
in the latest version I encounter the following error:
funannotate2 train -f white_koji_genome_clean_funannotate2.fasta -s "Aspergillus oryzae" -o anid_f2
[Nov 05 02:57 PM] Python v3.12.12; funannotate2 v25.11.1; gfftk v25.6.10; buscolite v25.4.24
[Nov 05 02:57 PM] Loading genome assembly and running QC checks
[Nov 05 02:57 PM] Genome stats:
{
"n_contigs": 26,
"size": 37002322,
"n50": 2237489,
"n90": 739949,
"l50": 6,
"l90": 14,
"avg_length": 1423166
}
[Nov 05 02:57 PM] Filtered genome for training: kept 26 contigs (37,002,322 bp), filtered 0 contigs (0 bp) shorter than 10,000 bp
[Nov 05 02:57 PM] Getting taxonomy information
{
"superkingdom": "Eukaryota",
"kingdom": "Fungi",
"phylum": "Ascomycota",
"class": "Eurotiomycetes",
"order": "Eurotiales",
"family": "Aspergillaceae",
"genus": "Aspergillus",
"species": "Aspergillus oryzae"
}
[Nov 05 02:57 PM] Choosing best augustus species based on taxonomy: aspergillus_oryzae
Traceback (most recent call last):
File "/home/miniconda3/envs/funannotate2/bin/funannotate2", line 7, in
sys.exit(main())
^^^^^^
File "/home/miniconda3/envs/funannotate2/lib/python3.12/site-packages/funannotate2/main.py", line 28, in main
train(args)
File "/home/miniconda3/envs/funannotate2/lib/python3.12/site-packages/funannotate2/train.py", line 149, in train
busco_model_path = os.path.join(
^^^^^^^^^^^^^
File "", line 76, in join
TypeError: expected str, bytes or os.PathLike object, not bool
Any idea what the problem might be? Thanks in advance.