From 8f415f3aa1f5337fc889306b7bfb701f40918447 Mon Sep 17 00:00:00 2001 From: Kimmo Palin Date: Tue, 16 Jun 2020 14:08:56 +0300 Subject: [PATCH] Have cutN report N:s also at beginning of sequence --- seqtk.c | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/seqtk.c b/seqtk.c index 17ae942..774e582 100644 --- a/seqtk.c +++ b/seqtk.c @@ -1041,10 +1041,8 @@ int stk_cutN(int argc, char *argv[]) while ((l = kseq_read(ks)) >= 0) { int k = 0, begin = 0, end = 0; while (find_next_cut(ks, k, &begin, &end) >= 0) { - if (begin != 0) { - if (gap_only) printf("%s\t%d\t%d\n", ks->name.s, begin, end); - else print_seq(stdout, ks, k, begin); - } + if (gap_only) printf("%s\t%d\t%d\n", ks->name.s, begin, end); + else print_seq(stdout, ks, k, begin); k = end; } if (!gap_only) print_seq(stdout, ks, k, l);