AttributeError: module 'pysam.libcalignedsegment' has no attribute '_AlignedSegment_Cache'

[ljwharbers]

Hi,

I wanted to give gwplot a try in python, however after installing it using pip install gwplot I get the following error on importing the package:

---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
Cell In[1], [line 1](vscode-notebook-cell:?execution_count=1&line=1)
----> [1](vscode-notebook-cell:?execution_count=1&line=1) from gwplot import Gw

File /vsc-hard-mounts/leuven-data/364/vsc36452/software/micromamba/lib/python3.12/site-packages/gwplot/__init__.py:4
      2 from gwplot.glfw_interface import GLFW
----> [4](https://vscode-remote+ssh-002dremote-002bg28l20.vscode-resource.vscode-cdn.net/vsc-hard-mounts/leuven-data/364/vsc36452/software/micromamba/lib/python3.12/site-packages/gwplot/__init__.py:4) from gwplot.interface import (
      5     Gw,
      6     GwPalette
      7 )
      9 import importlib.metadata
     11 __version__ = importlib.metadata.version("gwplot")

File gwplot/interface.pyx:1, in init gwplot.interface()

AttributeError: module 'pysam.libcalignedsegment' has no attribute '_AlignedSegment_Cache'

My pysam is version 0.23.0 (as indicated also in the .toml as a requirement).

Thanks again for the cool tool!

Cheers,
Luuk

[kcleal]

Hi @ljwharbers,
I think pysam should be upgraded in this case, I think the toml is out of date sorry! I will get it updated. The wheel was built with a newer version.