diff --git a/KustoSchemaTools/KustoSchemaHandler.cs b/KustoSchemaTools/KustoSchemaHandler.cs
index 4599e58..4543e3f 100644
--- a/KustoSchemaTools/KustoSchemaHandler.cs
+++ b/KustoSchemaTools/KustoSchemaHandler.cs
@@ -25,11 +25,26 @@ public KustoSchemaHandler(ILogger<KustoSchemaHandler<T>> schemaHandlerLogger, Ya
         public YamlDatabaseHandlerFactory<T> YamlDatabaseHandlerFactory { get; }
         public KustoDatabaseHandlerFactory<T> KustoDatabaseHandlerFactory { get; }
 
-        public async Task<(string markDown, bool isValid)> GenerateDiffMarkdown(string path, string databaseName)
+        public Clusters FilterClusters(Clusters clusters, List<string>? includedConnections)
         {
+            // Connections may be marked inactive, so we need to filter them out
+            // However, if includedConnections is provided we should only process those regardless of the IsActive flag
+            var includedConnectionsIsNullOrEmpty = includedConnections == null || includedConnections.Count == 0;
+            var filteredConnections = includedConnectionsIsNullOrEmpty
+                ? clusters.Connections.Where(cluster => cluster.IsActive).ToList()
+                : clusters.Connections.Where(cluster => includedConnections != null && includedConnections.Any(name => string.Equals(name, cluster.Name, StringComparison.OrdinalIgnoreCase))).ToList();
+
+            return new Clusters
+            {
+            Connections = filteredConnections
+            };
+        }
 
+        public async Task<(string markDown, bool isValid)> GenerateDiffMarkdown(string path, string databaseName, List<string>? includedConnections = null)
+        {
             var clustersFile = File.ReadAllText(Path.Combine(path, "clusters.yml"));
             var clusters = Serialization.YamlPascalCaseDeserializer.Deserialize<Clusters>(clustersFile);
+            clusters = FilterClusters(clusters, includedConnections);
             var sb = new StringBuilder();
             bool isValid = true;
 
@@ -74,7 +89,7 @@ public KustoSchemaHandler(ILogger<KustoSchemaHandler<T>> schemaHandlerLogger, Ya
                 }
 
                 var scriptSb = new StringBuilder();
-                foreach(var script in changes.SelectMany(itm => itm.Scripts).Where(itm => itm.IsValid == true).OrderBy(itm => itm.Order))
+                foreach (var script in changes.SelectMany(itm => itm.Scripts).Where(itm => itm.IsValid == true).OrderBy(itm => itm.Order))
                 {
                     scriptSb.AppendLine(script.Text);
                 }
@@ -82,12 +97,10 @@ public KustoSchemaHandler(ILogger<KustoSchemaHandler<T>> schemaHandlerLogger, Ya
                 Log.LogInformation($"Following scripts will be applied:\n{scriptSb}");
             }
 
-            foreach(var follower in yamlDb.Followers)
+            foreach (var follower in yamlDb.Followers)
             {
-
                 Log.LogInformation($"Generating diff markdown for {Path.Combine(path, databaseName)} => {follower.Key}/{follower.Value.DatabaseName}");
 
-
                 var followerClient = new KustoClient(follower.Key);
                 var oldModel = FollowerLoader.LoadFollower(follower.Value.DatabaseName, followerClient);
 
@@ -100,7 +113,7 @@ public KustoSchemaHandler(ILogger<KustoSchemaHandler<T>> schemaHandlerLogger, Ya
                 foreach (var change in changes)
                 {
                     sb.AppendLine(change.Markdown);
-                    sb.AppendLine();                    
+                    sb.AppendLine();
                 }
             }
             return (sb.ToString(), isValid);
@@ -110,14 +123,15 @@ public async Task Import(string path, string databaseName, bool includeColumns)
         {
             var clustersFile = File.ReadAllText(Path.Combine(path, "clusters.yml"));
             var clusters = Serialization.YamlPascalCaseDeserializer.Deserialize<Clusters>(clustersFile);
-
+            clusters = FilterClusters(clusters, null);
+            
             var escapedDbName = databaseName.BracketIfIdentifier();
             var dbHandler = KustoDatabaseHandlerFactory.Create(clusters.Connections[0].Url, escapedDbName);
 
             var db = await dbHandler.LoadAsync();
             if (includeColumns == false)
             {
-                foreach(var table in db.Tables.Values)
+                foreach (var table in db.Tables.Values)
                 {
                     table.Columns = new Dictionary<string, string>();
                 }
@@ -128,16 +142,16 @@ public async Task Import(string path, string databaseName, bool includeColumns)
         }
 
 
-        public async Task<ConcurrentDictionary<string,Exception>> Apply(string path, string databaseName)
+        public async Task<ConcurrentDictionary<string, Exception>> Apply(string path, string databaseName, List<string>? includedConnections = null)
         {
             var clustersFile = File.ReadAllText(Path.Combine(path, "clusters.yml"));
             var clusters = Serialization.YamlPascalCaseDeserializer.Deserialize<Clusters>(clustersFile);
-
+            clusters = FilterClusters(clusters, includedConnections);
             var escapedDbName = databaseName.BracketIfIdentifier();
             var yamlHandler = YamlDatabaseHandlerFactory.Create(path, databaseName);
             var yamlDb = await yamlHandler.LoadAsync();
 
-            var results = new ConcurrentDictionary<string,Exception>();
+            var results = new ConcurrentDictionary<string, Exception>();
 
             await Parallel.ForEachAsync(clusters.Connections, async (cluster, token) =>
             {
diff --git a/KustoSchemaTools/Model/Cluster.cs b/KustoSchemaTools/Model/Cluster.cs
index 95e220a..64b4812 100644
--- a/KustoSchemaTools/Model/Cluster.cs
+++ b/KustoSchemaTools/Model/Cluster.cs
@@ -5,6 +5,7 @@ public class Cluster
         public string Name { get; set; }
         public string Url { get; set; }
         public List<DatabaseScript> Scripts { get; set; } = new List<DatabaseScript>();
+        public bool IsActive { get; set; } = true;
     }
 
 }