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Issues in SEACR_1.1.sh file #81

@saimaniharreddy

Description

@saimaniharreddy

I'm getting this error
Calling enriched regions without control file
Proceeding without normalization of control to experimental bedgraph
Using stringent threshold
Creating experimental AUC file: Tue Mar 5 03:04:34 PST 2024
/Users/saimaniharreddynallagondu/Documents/USC/Pipelines/CUT-RUNTools-2.0/install/SEACR_1.1.sh: line 103: ?v????NCO?S?L.auc.bed: Illegal byte sequence.

Can you please suggest what could be the problem here? Or is it something related to my environment setup? I have validated the bulk-config.json file, using validation script provided and everything looked fine.

I'm also getting this warning in between, would that be a reason for this?
WARNING 2024-03-04 10:17:30 SnappyLoader Snappy native library failed to load.
org.xerial.snappy.SnappyError: [FAILED_TO_LOAD_NATIVE_LIBRARY] no native library is found for os.name=Mac and os.arch=aarch64
at org.xerial.snappy.SnappyLoader.findNativeLibrary(SnappyLoader.java:342)
at org.xerial.snappy.SnappyLoader.loadNativeLibrary(SnappyLoader.java:176)
at org.xerial.snappy.SnappyLoader.loadSnappyApi(SnappyLoader.java:154)
at org.xerial.snappy.Snappy.(Snappy.java:47)
at org.xerial.snappy.SnappyOutputStream.(SnappyOutputStream.java:97)
at org.xerial.snappy.SnappyOutputStream.(SnappyOutputStream.java:89)
at org.xerial.snappy.SnappyOutputStream.(SnappyOutputStream.java:79)
at htsjdk.samtools.util.SnappyLoader.(SnappyLoader.java:58)
at htsjdk.samtools.util.SnappyLoader.(SnappyLoader.java:48)
at htsjdk.samtools.util.TempStreamFactory.getSnappyLoader(TempStreamFactory.java:42)
at htsjdk.samtools.util.TempStreamFactory.wrapTempOutputStream(TempStreamFactory.java:74)
at htsjdk.samtools.util.SortingCollection.spillToDisk(SortingCollection.java:251)
at htsjdk.samtools.util.SortingCollection.add(SortingCollection.java:182)
at htsjdk.samtools.SAMFileWriterImpl.addAlignment(SAMFileWriterImpl.java:187)
at picard.sam.SortSam.doWork(SortSam.java:161)
at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:305)
at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:103)
at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:113)

Please suggest what could be done

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