How to parse with only the 5' primer and random region size: command line #115
Description
How do you properly write the configuration file to use the 5' primer and the random region size on the command line?
What I tried is:
"#" OPTIONAL, if not specified, we need Experiment.randomizedRegionSize
"#" Experiment.primer3 =
Experiment.randomizedRegionSize = 40
(no actual quotations used, I just didn't know how to type it here without making it a "header")
This resulted in it not processing any of the reads and not exporting anything.
Ultimately, I want to be able to parse and export the cycle files on the cluster with only the random regions of length 40.
Thank you