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Hello,
I am running into issues with the installation and the import of SEACells.
Making the environment from the environment.yaml file seems to not work due to python=3.5
I tried replacing this with 3.10. The environment is then created but SEACells itself cannot be imported
I tried this in multiple environments, on our cluster, locally ect.
I got it running it seems like for now with this env:
name: seacells
channels:
- conda-forge
- bioconda
dependencies: - python=3.10
- scanpy=1.11.1
- anndata=0.11.4
- palantir=1.4.0
- numpy
- scipy
- pandas
- matplotlib>=3.8,<3.10 # force Matplotlib 3.8.x or 3.9.x
- cmake
- pip
- pip:
- seacells==0.3.3 # or git+https://github.com/dpeerlab/SEACells.git@main
I
- seacells==0.3.3 # or git+https://github.com/dpeerlab/SEACells.git@main
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