Remove unused other_tools directory and associated tests

Deleted the other_tools directory containing deprecated tools (create_directory, list_directory, move_file, namespace, and symbol tools) that were not actively used in the main MCP server. Updated PROJECT_SUMMARY.md to remove all references to these deprecated tools and simplified the Extension Points section.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

Author: Bruce Hauman

PROJECT_SUMMARY.md

@@ -64,19 +64,6 @@ The project allows AI assistants to:
   - `config.clj`: Configuration file management for persistence
   - `truncate.clj`: Pretty-printing with depth truncation
 
-#### Unused Tools (moved to other_tools/)
-
-**Note**: These tools have been moved to `/src/clojure_mcp/other_tools/` to clearly separate them from actively used tools. They remain fully functional with passing tests but are not registered in `main.clj`. This organizational change helps maintain a cleaner codebase by distinguishing between essential tools and potentially unnecessary ones.
-
-- `/src/clojure_mcp/other_tools/create_directory/`: Tool for creating directories
-- `/src/clojure_mcp/other_tools/list_directory/`: Tool for listing directory contents
-- `/src/clojure_mcp/other_tools/move_file/`: Tool for moving/renaming files
-- `/src/clojure_mcp/other_tools/namespace/`: Clojure namespace exploration tools
-  - Includes: `current_namespace`, `clojure_list_namespaces`, `clojure_list_vars_in_namespace`
-- `/src/clojure_mcp/other_tools/symbol/`: Symbol information and documentation tools
-  - Includes: `symbol_completions`, `symbol_metadata`, `symbol_documentation`, `source_code`, `symbol_search`
-
-All unused tools have corresponding test files moved to `/test/clojure_mcp/other_tools/` with updated namespace declarations.
 
 ### Example Main Files
 
@@ -503,10 +490,9 @@ See `/doc/custom-mcp-server.md` for comprehensive documentation on creating cust
 ## Extension Points
 
 1. **Adding New Tools**:
-   - Create a new tool namespace in `/src/clojure_mcp/tools/` for active tools
+   - Create a new tool namespace in `/src/clojure_mcp/tools/`
    - Implement the required multimethods from `tool-system`
    - Register the tool in `main.clj` within the `make-tools` function
-   - Note: Tools in `/src/clojure_mcp/other_tools/` are not automatically registered
 
 2. **Creating Custom Servers**:
    - Define factory functions for tools, prompts, and resources
@@ -517,14 +503,7 @@ See `/doc/custom-mcp-server.md` for comprehensive documentation on creating cust
    - Most tools follow a pipeline architecture that can be modified by adding new steps
    - Pipeline steps follow a thread-first pattern with error short-circuiting
 
-4. **Re-activating Unused Tools**:
-   - Tools in `/src/clojure_mcp/other_tools/` can be re-activated by:
-     - Moving them back to `/src/clojure_mcp/tools/`
-     - Updating namespace declarations
-     - Adding them to the imports and `make-tools` function in `main.clj`
-   - Alternatively, create custom MCP servers using these tools via the core API
-
-5. **Alternative Transports**:
+4. **Alternative Transports**:
    - Use `sse-core/build-and-start-mcp-server` for SSE transport
    - See `sse-main.clj` for an example implementation
 
@@ -558,6 +537,4 @@ See `/doc/custom-mcp-server.md` for comprehensive documentation on creating cust
 - Path-based data manipulation using `set_path`/`get_path`/`delete_path` operations
 - Direct storage of JSON-compatible values
 
-**Tool Reorganization**: To improve codebase maintainability, unused tools have been moved to `/src/clojure_mcp/other_tools/`. This separation clarifies which tools are actively used in the main MCP server (`main.clj`) versus those that remain available but are not currently essential.
-
 This project summary is designed to provide AI assistants with a quick understanding of the Clojure MCP project structure and capabilities, enabling more effective assistance with minimal additional context. The project continues to evolve with improvements focused on making it easier to create custom MCP servers while maintaining compatibility with a wide range of LLMs.

doc/component-filtering.md

@@ -30,45 +30,45 @@ Control which tools are available to the AI assistant.
 ### Configuration Keys
 
 ```edn
-{:enable-tools [:clojure-eval :read-file :file-write]  ; Only these tools
- :disable-tools [:dispatch-agent :architect]}          ; Remove these tools
+{:enable-tools [:clojure_eval :read_file :file_write]  ; Only these tools
+ :disable-tools [:dispatch_agent :architect]}          ; Remove these tools
 ```
 
 ### Tool Identifiers
 
 Tools can be specified using keywords or strings:
-- `:clojure-eval` or `"clojure-eval"`
-- `:read-file` or `"read_file"` 
-- `:file-write` or `"file_write"`
+- `:clojure_eval` or `"clojure_eval"`
+- `:read_file` or `"read_file"` 
+- `:file_write` or `"file_write"`
 
 Common tool IDs include:
-- `:clojure-eval` - Evaluate Clojure code
-- `:read-file` - Read file contents
-- `:file-edit` - Edit files
-- `:file-write` - Write files
+- `:clojure_eval` - Evaluate Clojure code
+- `:read_file` - Read file contents
+- `:file_edit` - Edit files
+- `:file_write` - Write files
 - `:bash` - Execute shell commands
 - `:grep` - Search file contents
-- `:glob-files` - Find files by pattern
-- `:dispatch-agent` - Launch sub-agents
+- `:glob_files` - Find files by pattern
+- `:dispatch_agent` - Launch sub-agents
 - `:architect` - Technical planning
-- `:code-critique` - Code review
-- `:scratch-pad` - Persistent storage
+- `:code_critique` - Code review
+- `:scratch_pad` - Persistent storage
 
 ### Examples
 
 **Minimal REPL-only server:**
 ```edn
-{:enable-tools [:clojure-eval]}
+{:enable-tools [:clojure_eval]}
 ```
 
 **Read-only exploration server:**
 ```edn
-{:enable-tools [:read-file :grep :glob-files :LS :clojure-inspect-project]}
+{:enable-tools [:read_file :grep :glob_files :LS :clojure_inspect_project]}
 ```
 
 **Full access except agents:**
 ```edn
-{:disable-tools [:dispatch-agent :architect :code-critique]}
+{:disable-tools [:dispatch_agent :architect :code_critique]}
 ```
 
 ## Prompts Filtering