diff --git a/README.txt b/README.txt index 3577b6f..bd46add 100755 --- a/README.txt +++ b/README.txt @@ -29,7 +29,7 @@ This will build F-seq and package it in the dist~ folder. To then run F-seq: F-Seq Version 1.85 usage: fseq [options]... [file(s)]... -b background directory (default=none) - -c genomic count of sequence reads (defualt = + -c genomic count of sequence reads (default = calculated) -d input directory (default=current directory) -f fragment size (default=estimated from data) @@ -41,7 +41,7 @@ usage: fseq [options]... [file(s)]... -s wiggle track step (default=1) -t threshold (standard deviations) (default=4.0) -v verbose output - -wg wg threshold set (defualt = calculated) + -wg wg threshold set (default = calculated) Make sure 'bin/fseq' is executable (chmod 0755 bin/fseq)