How to read the data?

[vron8632]

Thanks for your share the data in https://drive.google.com/open?id=1o6c2Ofy3dHwvJnU83Y8cruYOL-c77t4g
but when I read the data using the code below, there is a error: KeyError: 'Axes'.
I have tried many version of pycromanager such as 0.2.0 to 0.27.0.

"""
from pycromanager import Dataset

dataset_dir = '/Users/henrypinkard/tmp/experiment_1_65'
dataset = Dataset(dataset_dir)
data = dataset.as_array()
print(dataset.axes.keys())

"""

I want to turn the 53 files in .tif to image data in numpy, looking forward to your answer.

[henrypinkard]

Its been a while, but It may be that you need to use pygellan (the precursor to pycromanager). you can pip install pygellan

[vron8632]

Its been a while, but It may be that you need to use pygellan (the precursor to pycromanager). you can pip install pygellan

Thanks. Where does the code need to be changed ?

[henrypinkard]

whereever it says pycromanager instead use pygellan

[henrypinkard]

This may be wrong though...Im not sure I remember beyond whats in the code