From e7f579307821e708e2c8d9455460fd78df5195a7 Mon Sep 17 00:00:00 2001
From: Xander <102053371+fractalsbyx@users.noreply.github.com>
Date: Tue, 1 Jul 2025 16:00:24 -0400
Subject: [PATCH] some fixes

initialized some members in BInary2OSys corrected output json format, updated patch
---
 ammber/BinarySystems.py | 2 ++
 ammber/__init__.py      | 2 +-
 ammber/utils.py         | 5 +++--
 pyproject.toml          | 2 +-
 4 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/ammber/BinarySystems.py b/ammber/BinarySystems.py
index 8b05c38..b266ce4 100644
--- a/ammber/BinarySystems.py
+++ b/ammber/BinarySystems.py
@@ -413,6 +413,8 @@ def __init__(self, component="", solution_component="", phases=None):
         phases : dict {string phase_name : BinaryIsothermal2ndOrderPhase phase}
             (optional) composition to be sampled
         """
+        self.component = component
+        self.solution_component = solution_component
         self.phases = {}
         if phases is not None:
             self.phases = phases
diff --git a/ammber/__init__.py b/ammber/__init__.py
index 5e1c67d..a30502f 100644
--- a/ammber/__init__.py
+++ b/ammber/__init__.py
@@ -4,6 +4,6 @@
 A Python package for parametrizing gibbs free energy curves for phase-field modeling.
 """
 
-__version__ = "0.1.4"
+__version__ = "0.1.6"
 __author__ = 'W. Beck Andrews, Xander Mensah, Katsuyo Thornton'
 __credits__ = 'University of Michigan'
\ No newline at end of file
diff --git a/ammber/utils.py b/ammber/utils.py
index bfc1a20..7f8c667 100644
--- a/ammber/utils.py
+++ b/ammber/utils.py
@@ -31,7 +31,7 @@ def add_to_dict(binaryIsothermalSys, dict, add_templates=False, c0={}, Vm=None,
             dict["phases"][phase_name][comp] = {}
         dict["phases"][phase_name][comp]["k_well"] = phase.kwell
         dict["phases"][phase_name][comp]["c_min"] = phase.cmin
-        dict["phases"][phase_name][comp]["f_min"] = phase.fmin
+        dict["phases"][phase_name]["f_min"] = phase.fmin
 
         if add_templates:
             c0_phase_keys = list(c0.keys())
@@ -47,4 +47,5 @@ def add_to_dict(binaryIsothermalSys, dict, add_templates=False, c0={}, Vm=None,
             dict["Vm"] = Vm if Vm is not None else -1.0
         if "order_parameters" not in dict:
             dict["order_parameters"] = list(binaryIsothermalSys.phases.keys())
-        
\ No newline at end of file
+        if "dimensions" not in dict:
+            dict["dimensions"] = { "length_scale": 0.0, "time_scale": 0.0, "energy_density_scale": 0.0 }
diff --git a/pyproject.toml b/pyproject.toml
index 61c8d40..8761829 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -29,7 +29,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "ammber"
-version = "0.1.4"
+version = "0.1.6"
 description = "A Python package for parametrizing Gibbs free energy curves for phase-field modeling"
 authors = [
     { name = "W. Beck Andrews", email = "wband@umich.edu" },