AttributeError: 'module' object has no attribute 'TupleProxy'

[emucaki]

I have finally installed all dependencies (including python packages pybedtools and ghmm), and I get the following error when attempting to run the program:

python pipeclip.py -i ERR_TopHat_Aligned.bam -o ERR-NoRepeatRemoval -c 3 -l 25 -m 2 -r 0 -M 0.05 -C 0.05 -s hg19

Traceback (most recent call last):
File "pipeclip.py", line 13, in
from lib import *
File "/project/xxxxx/emucaki/RNPS1-FASTQ/PIPE-CLIP-master/lib/init.py", line 2, in
import Alignment
File "/project/xxxxx/emucaki/RNPS1-FASTQ/PIPE-CLIP-master/lib/Alignment.py", line 6, in
import Enrich
File "/project/xxxxx/emucaki/RNPS1-FASTQ/PIPE-CLIP-master/lib/Enrich.py", line 15, in
from pysam import *
AttributeError: 'module' object has no attribute 'TupleProxy'

Any help would be most appreciated.

[jalalsiddiqui]

I am having the same error with this. I would appreciate any help that I can get.

[jalalsiddiqui]

I also have made an issue with pysam if this can help

pysam-developers/pysam#809

[xiangrong7]

I am having the same error with this, I would appreciate any help that I can get,too