Skip to content

Add Segmentation export using FreeSurfer label values #5

@Sunderlandkyl

Description

@Sunderlandkyl

Exporting a segmentation does not currently guarantee that labelmap values will match the expected values.

FreeSurfer segmentations are currently imported and assigned to segments using the FreeSurfer values, however the label values may not be the same on export (see related issue here).

Segmentation are currently only saved as NRRD, however we should add the option to export the Segmentations to other FreeSurfer formats (NIFTI, MGZ, etc.)

Related discussion https://discourse.slicer.org/t/export-segmentation-scene-mrml-and-segmentations-nrrd-into-nifti-format-for-dropbox-viewing/12517.

Metadata

Metadata

Assignees

No one assigned

    Labels

    enhancementNew feature or request

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions