Structure of BLOCKS directory #5
Description
Hello,
It's unclear to me based on the README how tiles should be stored inside the BLOCKS directory.
My current directory structure is the following:
-data
- BLOCKS
- 00_(0,0).png
- 00_(0,256).png
- ...
- 99_(3584,3584).png
- data_CLINI.xlsx
- data_SLIDE.csv
I am getting the following error. Is there something wrong with the way I've structured my data?
TORCH Detected: cuda
------------------------------
./EXPERIMENTS/SYNTH_CLAM_TRAINFULL_isCancer_1
LOAD THE DATASET FOR TRAINING...
LOADING DATA FROM /data/jjj72/projects/HIA/data/BLOCKS...
Remove the NaN values from the Target Label...
0 Patients didnt have the proper label for target label: isCancer
Data for 0 Patients from Clini Table is not found in Slide Table!
Data for 0 Patients from Slide Table is not found in Clini Table!
------------------------------
0%| | 0/100 [00:00<?, ?it/s]
Traceback (most recent call last):
File "Main.py", line 35, in <module>
Classic_Training(args)
File "/home/jjj72/projects/HIA/Classic_Training.py", line 57, in Classic_Training
patientsList, labelsList, args.csvFile = ConcatCohorts_Classic(imagesPath = args.datadir_train,
File "/home/jjj72/projects/HIA/utils/data_utils.py", line 326, in ConcatCohorts_Classic
if not len(os.listdir(slideName)) <= minNumberOfTiles:
NotADirectoryError: [Errno 20] Not a directory: '/data/jjj72/projects/HIA/data/BLOCKS/00_(0,0).png'```