Merge branch 'main' of https://github.com/InPhyT/MultilayerGraphs.jl

Author: InterdisciplinaryPhysicsTeam

.JuliaFormatter.jl

@@ -0,0 +1,5 @@
+using Pkg                 # Load package manager
+Pkg.add("JuliaFormatter") # Install JuliaFormatter
+
+using JuliaFormatter      # Load JuliaFormatter
+format("."; verbose=true) # Format all files 

.gitignore

@@ -30,4 +30,4 @@ docs/site/
 Manifest.toml
 
 # Formatting files 
-formatter.jl
+##.JuliaFormatter.jl

README.md

@@ -37,7 +37,7 @@ In the package documentation we have prepared a [tutorial](https://inphyt.github
 
 Here we highlight the major future developments we have currently identified:
 
-- [ ] Better integration with [Graphs.jl](https://github.com/JuliaGraphs/Graphs.jl) (e.g. move the `AbstractVertex` to Graphs.jl, standardize graphs constructors, etc.);
+- [ ] Better integration with [Graphs.jl](https://github.com/JuliaGraphs/Graphs.jl). We've recently opened an [issue](https://github.com/JuliaGraphs/Graphs.jl/issues/165) on Graphs.jl illustrating our proposals;
 - [ ] Better integration with [MetaGraphs.jl](https://github.com/JuliaGraphs/MetaGraphs.jl) and [SimpleValueGraphs.jl](https://github.com/simonschoelly/SimpleValueGraphs.jl). Although it is possible to specify a `MetaGraph` and `SimpleValueGraph` as layer and/or interlayer, they are not yet fully supported (i.e. API may be a little unfit for them). An example using MetaGraphs, SimpleValueGraphs can be found at our announcement post [here]();
 - [ ] Optimise the adjacency tensor;
 - [ ] More intuitive constructor for `Interlayer`;

src/abstractmultilayergraph.jl

@@ -134,7 +134,7 @@ function _specify_interlayer!(
     all(in.([new_interlayer.layer_1, new_interlayer.layer_2], Ref(mg.layers_names))) ||
         throw(
             ErrorException(
-                "The new interlayer conencts two layers that are not (one or both) part of the multilayer graph. Make sure you spelled the `layer_1` and `layer_2` arguments of the `Interlayer` correctly.",
+                "The new interlayer connects two layers that are not (one or both) part of the multilayer graph. Make sure you spelled the `layer_1` and `layer_2` arguments of the `Interlayer` correctly.",
             ),
         )
 
@@ -694,7 +694,7 @@ function Graphs.modularity(
     n_layers = length(mg.layers)
     size(c) == (n_nodes, n_layers) || throw(
         ErrorException(
-            "The size of the community matrx does not match (nn(mg),length(mg.layers)), found $(size(c)) and $((nn(mg),length(mg.layers)))",
+            "The size of the community matrix does not match (nn(mg),length(mg.layers)), found $(size(c)) and $((nn(mg),length(mg.layers)))",
         ),
     )
 

src/traits.jl

@@ -1,5 +1,4 @@
 # Define traits from SimpleTraits.jl
-
 """
     IsWeighted{X}