Format all scripts

Co-Authored-By: Claudio Moroni <43729990+ClaudMor@users.noreply.github.com>
Co-Authored-By: Pietro Monticone <38562595+pitmonticone@users.noreply.github.com>

Author: 3 people

src/MultilayerGraphs.jl

@@ -204,4 +204,4 @@ include("multilayerdigraph.jl")
 include("utilities.jl")
 include("tensorsfactorizations.jl")
 
-end
+end

src/abstractmultilayerdigraph.jl

@@ -409,7 +409,7 @@ function get_subgraph(
         layer_1_multilayervertices,
         layer_2_multilayervertices,
         unique(edge_list),
-        descriptor
+        descriptor,
     )
 end
 

src/abstractmultilayergraph.jl

@@ -1200,25 +1200,52 @@ function to_string(x::AbstractMultilayerGraph)
     unionall_type = typeof(x).name.wrapper
     parameters = typeof(x).parameters
 
-    layers_names              = name.(x.layers)
-    layers_underlying_graphs  = typeof.(graph.(x.layers))
-
-    layers_table = pretty_table(String, hcat(layers_names, layers_underlying_graphs); title = "### LAYERS", header = (["NAME", "UNDERLYING GRAPH"]), alignment = :c, header_alignment = :c, header_crayon = crayon"yellow bold", hlines = :all)
+    layers_names = name.(x.layers)
+    layers_underlying_graphs = typeof.(graph.(x.layers))
+
+    layers_table = pretty_table(
+        String,
+        hcat(layers_names, layers_underlying_graphs);
+        title="### LAYERS",
+        header=(["NAME", "UNDERLYING GRAPH"]),
+        alignment=:c,
+        header_alignment=:c,
+        header_crayon=crayon"yellow bold",
+        hlines=:all,
+    )
 
     interlayers_names = name.(values(x.interlayers))
-    interlayers_underlying_graphs  = typeof.(graph.(values(x.interlayers)))
+    interlayers_underlying_graphs = typeof.(graph.(values(x.interlayers)))
     interlayer_layer_1s = getproperty.(values(x.interlayers), Ref(:layer_1))
     interlayer_layer_2s = getproperty.(values(x.interlayers), Ref(:layer_2))
-    interlayer_tranfers = getproperty.(values(x.interlayers), Ref(:transfer_vertex_metadata))
-
-    interlayers_table = pretty_table(String, hcat(interlayers_names, interlayer_layer_1s, interlayer_layer_2s, interlayers_underlying_graphs, interlayer_tranfers ); title = "### INTERLAYERS", header = (["NAME", "LAYER 1", "LAYER 2", "UNDERLYING GRAPH", "TRANSFER VERTEX METADATA"]), alignment = :c, header_alignment = :c, header_crayon = crayon"yellow bold", hlines = :all)
+    interlayer_tranfers =
+        getproperty.(values(x.interlayers), Ref(:transfer_vertex_metadata))
+
+    interlayers_table = pretty_table(
+        String,
+        hcat(
+            interlayers_names,
+            interlayer_layer_1s,
+            interlayer_layer_2s,
+            interlayers_underlying_graphs,
+            interlayer_tranfers,
+        );
+        title="### INTERLAYERS",
+        header=([
+            "NAME", "LAYER 1", "LAYER 2", "UNDERLYING GRAPH", "TRANSFER VERTEX METADATA"
+        ]),
+        alignment=:c,
+        header_alignment=:c,
+        header_crayon=crayon"yellow bold",
+        hlines=:all,
+    )
 
-    """
-    `$unionall_type` with vertex type `$(parameters[1])` and weight type `$(parameters[2])`.
+    return """
+           `$unionall_type` with vertex type `$(parameters[1])` and weight type `$(parameters[2])`.
 
-    $layers_table
+           $layers_table
 
-    $interlayers_table
-    """
+           $interlayers_table
+           """
 end
 Base.show(io::IO, x::AbstractMultilayerGraph) = print(io, to_string(x))

src/abstractmultilayerugraph.jl

@@ -274,7 +274,6 @@ function get_subgraph(
 
     _vertices = get_rich_mv.(Ref(mg), vs)
 
-
     edge_list = MultilayerEdge{U}[]
 
     for (src_v, halfedges_from_src) in zip(vs, getindex.(Ref(mg.fadjlist), vs))
@@ -367,7 +366,7 @@ function get_subgraph(
         layer_1_multilayervertices,
         layer_2_multilayervertices,
         unique(edge_list),
-        descriptor
+        descriptor,
     )
 end
 

src/graphs_extensions/metagraphs.jl

@@ -63,7 +63,9 @@ function _add_edge!(
 ) where {T<:Integer,W<:Union{<:Real,Nothing}}
     (isnothing(weight) || weight == 1.0) ||
         @warn "Trying to add a weighted edge to an unweighted graph of type $(typeof(g)). Weight $weight will be ignored."
-    return add_edge!(g, src, dst, Dict(Symbol(pair.first) => pair.second for pair in pairs(metadata) )) #Symbol(string(key)) => value for (key, value) in pairs(metadata)
+    return add_edge!(
+        g, src, dst, Dict(Symbol(pair.first) => pair.second for pair in pairs(metadata))
+    ) #Symbol(string(key)) => value for (key, value) in pairs(metadata)
 end
 
 function _get_edge_weight(

src/multilayerdigraph.jl

@@ -171,7 +171,9 @@ function MultilayerDiGraph(
 
     n = nv(empty_multilayerdigraph)
 
-    indegree_sequence,outdegree_sequence = sample_digraphical_degree_sequences(indegree_distribution,outdegree_distribution,n)
+    indegree_sequence, outdegree_sequence = sample_digraphical_degree_sequences(
+        indegree_distribution, outdegree_distribution, n
+    )
 
     return MultilayerDiGraph(
         empty_multilayerdigraph,

src/multilayeredge.jl

@@ -36,23 +36,31 @@ end
 
 Convert to `MultilayerEdge{Nothing}(src, dst, nothing, NamedTuple())`.
 """
-MultilayerEdge(src::AbstractMultilayerVertex, dst::AbstractMultilayerVertex) =  MultilayerEdge{Nothing}(src, dst, nothing, NamedTuple())
-
+function MultilayerEdge(src::AbstractMultilayerVertex, dst::AbstractMultilayerVertex)
+    return MultilayerEdge{Nothing}(src, dst, nothing, NamedTuple())
+end
 
 """
     MultilayerEdge(src::AbstractMultilayerVertex, dst::AbstractMultilayerVertex, weight::U) where {U <: Real}
 
 Convert to `MultilayerEdge{U}(src, dst, weight, NamedTuple())`.
 """
-MultilayerEdge(src::AbstractMultilayerVertex, dst::AbstractMultilayerVertex, weight::U) where {U<:Real} =  MultilayerEdge{U}(src, dst, weight, NamedTuple())
-
+function MultilayerEdge(
+    src::AbstractMultilayerVertex, dst::AbstractMultilayerVertex, weight::U
+) where {U<:Real}
+    return MultilayerEdge{U}(src, dst, weight, NamedTuple())
+end
 
 """
     MultilayerEdge(src::AbstractMultilayerVertex, dst::AbstractMultilayerVertex, metadata::NamedTuple)
 
 Convert to `MultilayerEdge{Nothing}(src, dst, nothing, metadata)`.
 """
-MultilayerEdge(src::AbstractMultilayerVertex, dst::AbstractMultilayerVertex, metadata::NamedTuple) =  MultilayerEdge{Nothing}(src, dst, nothing, metadata)
+function MultilayerEdge(
+    src::AbstractMultilayerVertex, dst::AbstractMultilayerVertex, metadata::NamedTuple
+)
+    return MultilayerEdge{Nothing}(src, dst, nothing, metadata)
+end
 
 """
     ME

src/multilayergraph.jl

@@ -102,7 +102,10 @@ function Graphs.add_edge!(
         #=         # Should we modify weight and metadata or should we return false? This may be something to decide ecosystem-wise
                 set_weight!(mg, src, dst, _weight)
                 set_metadata!(mg, src, dst, _metadata) =#
-        @debug "Edge already exists" me [edge for edge in edges(mg) if node(src(edge)) == Node("node_1") &&  node(dst(edge)) == Node("node_1")]
+        @debug "Edge already exists" me [
+            edge for edge in edges(mg) if
+            node(src(edge)) == Node("node_1") && node(dst(edge)) == Node("node_1")
+        ]
         return false
     end
 end
@@ -177,7 +180,6 @@ function MultilayerGraph(
         ),
     )
 
-
     empty_multilayergraph = MultilayerGraph(
         empty_layers,
         empty_interlayers;
@@ -187,7 +189,7 @@ function MultilayerGraph(
 
     n = nv(empty_multilayergraph)
 
-    degree_sequence = sample_graphical_degree_sequence(degree_distribution,n)
+    degree_sequence = sample_graphical_degree_sequence(degree_distribution, n)
 
     return MultilayerGraph(
         empty_multilayergraph, degree_sequence; allow_self_loops=false, perform_checks=false

src/subgraphs/abstractdescriptor.jl

@@ -5,5 +5,5 @@ An abstract tyep representing an abstract notion of subgraph descriptor
 """
 abstract type AbstractDescriptor{T<:Integer,U<:Real,G<:AbstractGraph{T}} end
 
-name(x::AbstractDescriptor)  = x.name
-graph(x::AbstractDescriptor) = x.null_graph
+name(x::AbstractDescriptor) = x.name
+graph(x::AbstractDescriptor) = x.null_graph

src/subgraphs/abstractsubgraph.jl

@@ -284,7 +284,7 @@ function add_edge_standard!(
     weight::W=nothing,
     metadata::Union{Tuple,NamedTuple}=NamedTuple(),
 ) where {T,U<:Real,W<:Union{U,Nothing},S<:AbstractSubGraph{T,U}}
-   #  @debug "" subgraph src dst weight metadata
+    #  @debug "" subgraph src dst weight metadata
     return add_edge!(
         subgraph,
         get_v(subgraph, src),