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Automated cypher reference document generation (CI)
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cypher/CYPHER.md

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| [How_many_elements_compared_to_all_existing_are_used_by_dependent_modules_for_Typescript.cypher](./Internal_Dependencies/How_many_elements_compared_to_all_existing_are_used_by_dependent_modules_for_Typescript.cypher) | Internal_Dependencies | How many elements compared to all existing are used by dependent Typescript modules? |
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| [How_many_packages_compared_to_all_existing_are_used_by_dependent_artifacts.cypher](./Internal_Dependencies/How_many_packages_compared_to_all_existing_are_used_by_dependent_artifacts.cypher) | Internal_Dependencies | How many packages compared to all existing are used by dependent artifacts? Requires "Add_file_name and_extension.cypher". |
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| [Inter_scan_and_project_dependencies_of_Typescript_modules.cypher](./Internal_Dependencies/Inter_scan_and_project_dependencies_of_Typescript_modules.cypher) | Internal_Dependencies | Inter scan/project higher-level module dependencies for manual exploration |
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| [Java_Artifact_build_levels_for_graphviz.cypher](./Internal_Dependencies/Java_Artifact_build_levels_for_graphviz.cypher) | Internal_Dependencies | List of all Java Artifacts and their dependencies with build levels for GraphViz Visualization |
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| [List_all_Java_artifacts.cypher](./Internal_Dependencies/List_all_Java_artifacts.cypher) | Internal_Dependencies | List all existing artifacts |
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| [List_all_Typescript_modules.cypher](./Internal_Dependencies/List_all_Typescript_modules.cypher) | Internal_Dependencies | List all existing internal Typescript modules. Requires "Set_localRootPath_for_modules.cypher", "Set_number_of...commits.cypher". |
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| [List_elements_that_are_used_by_many_different_modules_for_Typescript.cypher](./Internal_Dependencies/List_elements_that_are_used_by_many_different_modules_for_Typescript.cypher) | Internal_Dependencies | List elements that are used by many different modules |
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| [List_types_that_are_used_by_many_different_packages.cypher](./Internal_Dependencies/List_types_that_are_used_by_many_different_packages.cypher) | Internal_Dependencies | List types that are used by many different packages |
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| [Set_file_distance_as_shortest_contains_path_for_dependencies.cypher](./Internal_Dependencies/Set_file_distance_as_shortest_contains_path_for_dependencies.cypher) | Internal_Dependencies | Set file distance for dependencies as the shortest path of CONTAINS relationships (intuitively the fewest number of change directory commands needed) |
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| [Typescript_Module_build_levels_for_graphviz.cypher](./Internal_Dependencies/Typescript_Module_build_levels_for_graphviz.cypher) | Internal_Dependencies | List of all Typescript modules and their dependencies with build levels for GraphViz Visualization |
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| [Annotated_code_elements.cypher](./Java/Annotated_code_elements.cypher) | Java | Annotated code elements overall by element type with some examples |
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| [Annotated_code_elements_per_artifact.cypher](./Java/Annotated_code_elements_per_artifact.cypher) | Java | Annotated code elements per artifact and element type with some examples. Requires "Add_file_name and_extension.cypher". |
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| [Get_all_declared_and_inherited_methods_of_a_type.cypher](./Java/Get_all_declared_and_inherited_methods_of_a_type.cypher) | Java | Get all declared and inherited methods of a type |
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| [Path_Finding_5_All_pairs_shortest_path_distribution_overall.cypher](./Path_Finding/Path_Finding_5_All_pairs_shortest_path_distribution_overall.cypher) | Path_Finding | Path Finding - All pairs shortest path algorithm - Stream - Overall |
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| [Path_Finding_5_All_pairs_shortest_path_distribution_per_project.cypher](./Path_Finding/Path_Finding_5_All_pairs_shortest_path_distribution_per_project.cypher) | Path_Finding | Path Finding - All pairs shortest path algorithm - Stream - Per project |
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| [Path_Finding_5_All_pairs_shortest_path_examples.cypher](./Path_Finding/Path_Finding_5_All_pairs_shortest_path_examples.cypher) | Path_Finding | Path Finding - All pairs shortest path algorithm - Stream - Longest paths as examples |
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| [Path_Finding_6_Longest_paths_contributors_for_graphviz.cypher](./Path_Finding/Path_Finding_6_Longest_paths_contributors_for_graphviz.cypher) | Path_Finding | Path Finding - Longest path - Stream - List all dependencies for nodes contributing to longest paths and highlight those paths in the Visualization with GraphViz. |
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| [Path_Finding_6_Longest_paths_distribution_overall.cypher](./Path_Finding/Path_Finding_6_Longest_paths_distribution_overall.cypher) | Path_Finding | Longest paths distribution |
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| [Path_Finding_6_Longest_paths_distribution_per_project.cypher](./Path_Finding/Path_Finding_6_Longest_paths_distribution_per_project.cypher) | Path_Finding | Longest paths distribution |
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| [Path_Finding_6_Longest_paths_examples.cypher](./Path_Finding/Path_Finding_6_Longest_paths_examples.cypher) | Path_Finding | Path Finding - Longest path - Stream - Max. paths as examples |
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| [Set_Parameters.cypher](./Path_Finding/Set_Parameters.cypher) | Path_Finding | Example on how to set the parameters for centrality in this case for Packages and PageRank |
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| [Path_Finding_6_Longest_paths_for_graphviz.cypher](./Path_Finding/Path_Finding_6_Longest_paths_for_graphviz.cypher) | Path_Finding | Path Finding - Longest path - Stream - Find the top 100 dependencies contributing to the longest paths for Visualization with GraphViz |
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| [Set_Parameters.cypher](./Path_Finding/Set_Parameters.cypher) | Path_Finding | Example on how to set the parameters for path finding in this case for Packages and PageRank |
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| [Set_Parameters.cypher](./Similarity/Set_Parameters.cypher) | Similarity | Example on how to set the parameters for similarity in this case for Packages and Node Similarity |
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| [Similarity_1a_Estimate.cypher](./Similarity/Similarity_1a_Estimate.cypher) | Similarity | Similarity Estimate Memory |
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| [Similarity_1b_Statistics.cypher](./Similarity/Similarity_1b_Statistics.cypher) | Similarity | Similarity Statistics |
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| [Similarity_1g_Write_Mutated.cypher](./Similarity/Similarity_1g_Write_Mutated.cypher) | Similarity | Write the Similarity relationship from the projection into the Graph. Variables: dependencies_projection, dependencies_projection_write_property |
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| [Similarity_1h_Write.cypher](./Similarity/Similarity_1h_Write.cypher) | Similarity | Similarity Write |
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| [Similarity_1i_Write_Node_Properties.cypher](./Similarity/Similarity_1i_Write_Node_Properties.cypher) | Similarity | Write similar node names and their score per node |
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| [Set_Parameters.cypher](./Topological_Sort/Set_Parameters.cypher) | Topological_Sort | Example on how to set the parameters for topological sort in this case for Java Artifacts and Node Similarity |
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| [Topological_Sort_List.cypher](./Topological_Sort/Topological_Sort_List.cypher) | Topological_Sort | Topological Sort to list the properties topologicalSortIndex (e.g. build order) and maxDistanceFromSource (build level) for each code unit node. Needs graph-data-science plugin version >= 2.5.0 |
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| [Topological_Sort_Query.cypher](./Topological_Sort/Topological_Sort_Query.cypher) | Topological_Sort | Topological Sort to query the properties topologicalSortIndex (e.g. build order) and maxDistanceFromSource (build level) for each code unit node in topologicalSortIndex order. Requires "Add_file_name and_extension.cypher". Needs graph-data-science plugin version >= 2.5.0 |
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| [Topological_Sort_Write.cypher](./Topological_Sort/Topological_Sort_Write.cypher) | Topological_Sort | Topological Sort to write the properties topologicalSortIndex (e.g. build order) and maxDistanceFromSource (build level) into the graph. Needs graph-data-science plugin version >= 2.5.0 |

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