ColorDepthMIP_generator ran w/o error but generate nothing

[shuocao818]

Hello,

I installed ColorDepthMIP_Generator following the instructions. The macro 'Color Depth MIP batch 0315 2019' ran without reporting an error (see log below). However, nothing was generated after this process.
My original file was a .nrrd file generated from a neuron downloaded from FlyWire EM. It was either transformed to JRC2018U template that contains 456 stacks or a JFRC2 template that contains 218 stacks. Neither of them works.

Log:
Choose a directory for aligned confocal files
Choose a directory for Color MIP SAVE
Confocal Stack; /Users/user/Desktop/
MIP saving place; /Users/user/Desktop/
filepath; /tmp/MIP_batch.txt
Desired mean; 190
JFRCpath; /Applications/Fiji.app/plugins/Plugins_Color_MIP/JFRC2010_Mask.tif
VncMaskpathF; /Applications/Fiji.app/plugins/Plugins_Color_MIP/Mask_VNC_Female.tif
VncMaskpathM; /Applications/Fiji.app/plugins/Plugins_Color_MIP/Mask_VNC_Male.tif
JFRC3Dpath; /Applications/Fiji.app/plugins/Plugins_Color_MIP/JFRC2010_3D_Mask.nrrd
done

Thank you for your help!

[HideoOtsuna]

Hi, Please turn OFF “Skip MIP creation for already made in the save directory” option. This option is just recognizing file name before the file extension, not recognizing .nrrd and .tif difference. Thank you, Hideo

…

On Jul 28, 2020, at 3:13 PM, shuocao818 ***@***.***> wrote: Hello, I installed ColorDepthMIP_Generator following the instructions. The macro 'Color Depth MIP batch 0315 2019' ran without reporting an error (see log below). However, nothing was generated after this process. My original file was a .nrrd file generated from a neuron downloaded from FlyWire EM. It was either transformed to JRC2018U template that contains 456 stacks or a JFRC2 template that contains 218 stacks. Neither of them works. Log: Choose a directory for aligned confocal files Choose a directory for Color MIP SAVE Confocal Stack; /Users/user/Desktop/ MIP saving place; /Users/user/Desktop/ filepath; /tmp/MIP_batch.txt Desired mean; 190 JFRCpath; /Applications/Fiji.app/plugins/Plugins_Color_MIP/JFRC2010_Mask.tif VncMaskpathF; /Applications/Fiji.app/plugins/Plugins_Color_MIP/Mask_VNC_Female.tif VncMaskpathM; /Applications/Fiji.app/plugins/Plugins_Color_MIP/Mask_VNC_Male.tif JFRC3Dpath; /Applications/Fiji.app/plugins/Plugins_Color_MIP/JFRC2010_3D_Mask.nrrd done Thank you for your help! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#4>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADBJIL7BQMZDHMZPNR37CJLR54PMLANCNFSM4PK2VJEQ>.

[shuocao818]

Thanks a lot! It is working now.