From d2a9b27fda77d4a62c1095f47cb98c9ab91e0ca8 Mon Sep 17 00:00:00 2001 From: Matt McCormick Date: Thu, 27 Feb 2025 16:02:22 -0500 Subject: [PATCH] DOC: Update version in examples to 1.0a55 --- README.md | 8 ++++---- docs/deployments.md | 4 ++-- docs/jupyterlite/files/Hello3DWorld.ipynb | 2 +- docs/quick_start_guide.md | 10 +++++----- environment.yml | 2 +- examples/EnvironmentCheck.ipynb | 2 +- examples/GettersAndSetters.ipynb | 2 +- examples/Hello3DWorld.ipynb | 2 +- examples/NumPyArrayPointSet.ipynb | 2 +- .../integrations/MONAI/transform_visualization.ipynb | 2 +- examples/integrations/PyImageJ/ImageJImgLib2.ipynb | 2 +- examples/integrations/PyVista/LiDAR.ipynb | 2 +- examples/integrations/PyVista/UniformGrid.ipynb | 2 +- examples/integrations/dask/DaskArray.ipynb | 2 +- examples/integrations/itk/3DImage.ipynb | 2 +- examples/integrations/itk/DICOM.ipynb | 2 +- .../integrations/itk/IDC_Seg_Primer_Examples.ipynb | 2 +- examples/integrations/itk/MulticomponentNumPy.ipynb | 2 +- examples/integrations/itk/SelectROI.ipynb | 2 +- examples/integrations/itk/ThinPlateSpline.ipynb | 2 +- examples/integrations/itkwasm/3DImage.ipynb | 2 +- examples/integrations/itkwasm/SelectROI.ipynb | 2 +- examples/integrations/vtk/vtkImageData.ipynb | 2 +- examples/integrations/vtk/vtkPolyDataPointSet.ipynb | 2 +- examples/integrations/xarray/DataArray.ipynb | 2 +- .../integrations/zarr/OME-NGFF-Brainstem-MRI.ipynb | 2 +- 26 files changed, 34 insertions(+), 34 deletions(-) diff --git a/README.md b/README.md index cbf9c42a..76cd8fdc 100644 --- a/README.md +++ b/README.md @@ -20,7 +20,7 @@ The [EnvironmentCheck.ipynb](https://github.com/InsightSoftwareConsortium/itkwid To install for all environments: ```bash -pip install 'itkwidgets[all]>=1.0a49' +pip install 'itkwidgets[all]>=1.0a55' ``` ### Jupyter Notebook @@ -28,7 +28,7 @@ pip install 'itkwidgets[all]>=1.0a49' To install the widgets for the Jupyter Notebook with pip: ```bash -pip install 'itkwidgets[notebook]>=1.0a49' +pip install 'itkwidgets[notebook]>=1.0a55' ``` Then look for the ImJoy icon at the top in the Jupyter Notebook: @@ -40,7 +40,7 @@ Then look for the ImJoy icon at the top in the Jupyter Notebook: For Jupyter Lab 3 run: ```bash -pip install 'itkwidgets[lab]>=1.0a49' +pip install 'itkwidgets[lab]>=1.0a55' ``` Then look for the ImJoy icon at the top in the Jupyter Notebook: @@ -52,7 +52,7 @@ Then look for the ImJoy icon at the top in the Jupyter Notebook: For Google Colab run: ```bash -pip install 'itkwidgets>=1.0a49' +pip install 'itkwidgets>=1.0a55' ``` ## Example Notebooks diff --git a/docs/deployments.md b/docs/deployments.md index 8fac1ba8..539450fe 100644 --- a/docs/deployments.md +++ b/docs/deployments.md @@ -23,7 +23,7 @@ In the Pyodide notebook, ```python import piplite -await piplite.install("itkwidgets==1.0a49") +await piplite.install("itkwidgets==1.0a55") ``` See also the [Sphinx / ReadTheDocs @@ -72,7 +72,7 @@ also open them in Binder: [![Open in Binder](https://mybinder.org/badge_logo.svg To enable quick inspection of your 3D data in the browser or in your terminal you can install the command-line tool. ```bash -pip install 'itkwidgets[cli]>=1.0a49' +pip install 'itkwidgets[cli]>=1.0a55' playwright install --with-deps chromium ``` Previewing data in the terminal requires support for the iterm2 inline image protocol. Examples of terminals with this support include [wezterm](https://wezfurlong.org/wezterm/), [VSCode's Terminal](https://code.visualstudio.com/updates/v1_80#_image-support) (with VSCode >= v1.80), and [iTerm2](https://iterm2.com/index.html). diff --git a/docs/jupyterlite/files/Hello3DWorld.ipynb b/docs/jupyterlite/files/Hello3DWorld.ipynb index 981532dc..2a9e74d9 100644 --- a/docs/jupyterlite/files/Hello3DWorld.ipynb +++ b/docs/jupyterlite/files/Hello3DWorld.ipynb @@ -8,7 +8,7 @@ "outputs": [], "source": [ "import piplite\n", - "await piplite.install('itkwidgets==1.0a49')" + "await piplite.install('itkwidgets==1.0a55')" ] }, { diff --git a/docs/quick_start_guide.md b/docs/quick_start_guide.md index d0b9e721..34cc6977 100644 --- a/docs/quick_start_guide.md +++ b/docs/quick_start_guide.md @@ -9,7 +9,7 @@ The [EnvironmentCheck.ipynb](https://github.com/InsightSoftwareConsortium/itkwid To install for all environments: ```bash -pip install 'itkwidgets[all]>=1.0a49' +pip install 'itkwidgets[all]>=1.0a55' ``` ### Jupyter Notebook @@ -17,7 +17,7 @@ pip install 'itkwidgets[all]>=1.0a49' To install the widgets for the Jupyter Notebook with pip: ```bash -pip install 'itkwidgets[notebook]>=1.0a49' +pip install 'itkwidgets[notebook]>=1.0a55' ``` Then look for the ImJoy icon at the top in the Jupyter Notebook: @@ -29,7 +29,7 @@ Then look for the ImJoy icon at the top in the Jupyter Notebook: For Jupyter Lab 3 run: ```bash -pip install 'itkwidgets[lab]>=1.0a49' +pip install 'itkwidgets[lab]>=1.0a55' ``` Then look for the ImJoy icon at the top in the Jupyter Notebook: @@ -41,13 +41,13 @@ Then look for the ImJoy icon at the top in the Jupyter Notebook: For Google Colab run: ```bash -pip install 'itkwidgets>=1.0a49' +pip install 'itkwidgets>=1.0a55' ``` ### Command Line (CLI) ```bash -pip install 'itkwidgets[cli]>=1.0a49' +pip install 'itkwidgets[cli]>=1.0a55' playwright install --with-deps chromium ``` diff --git a/environment.yml b/environment.yml index 415cb813..fd235338 100644 --- a/environment.yml +++ b/environment.yml @@ -8,7 +8,7 @@ dependencies: - pyimagej - pip: - itk>=5.3.0 - - itkwidgets[all]>=1.0a49 + - itkwidgets[all]>=1.0a55 - imjoy-elfinder - imjoy-jupyter-extension - imjoy-jupyterlab-extension diff --git a/examples/EnvironmentCheck.ipynb b/examples/EnvironmentCheck.ipynb index 3279e8bd..12808348 100644 --- a/examples/EnvironmentCheck.ipynb +++ b/examples/EnvironmentCheck.ipynb @@ -106,7 +106,7 @@ "outputs": [], "source": [ "reqs = [\n", - " \"itkwidgets[all]>=1.0a49\",\n", + " \"itkwidgets[all]>=1.0a55\",\n", " \"imjoy-elfinder\",\n", " \"imjoy-jupyter-extension\",\n", " \"imjoy-jupyterlab-extension\",\n", diff --git a/examples/GettersAndSetters.ipynb b/examples/GettersAndSetters.ipynb index 7c5b4ac3..fd30b7f1 100644 --- a/examples/GettersAndSetters.ipynb +++ b/examples/GettersAndSetters.ipynb @@ -17,7 +17,7 @@ "source": [ "import sys\n", "\n", - "!{sys.executable} -m pip install -q imageio #\"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q imageio #\"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/Hello3DWorld.ipynb b/examples/Hello3DWorld.ipynb index 3d72a094..19419503 100644 --- a/examples/Hello3DWorld.ipynb +++ b/examples/Hello3DWorld.ipynb @@ -21,7 +21,7 @@ "source": [ "import sys\n", "\n", - "!{sys.executable} -m pip install -q imageio \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q imageio \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/NumPyArrayPointSet.ipynb b/examples/NumPyArrayPointSet.ipynb index e40616e6..102f81a0 100644 --- a/examples/NumPyArrayPointSet.ipynb +++ b/examples/NumPyArrayPointSet.ipynb @@ -21,7 +21,7 @@ "source": [ "import sys\n", "\n", - "!{sys.executable} -m pip install -q \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/MONAI/transform_visualization.ipynb b/examples/integrations/MONAI/transform_visualization.ipynb index 3a0d2f38..0bf38141 100644 --- a/examples/integrations/MONAI/transform_visualization.ipynb +++ b/examples/integrations/MONAI/transform_visualization.ipynb @@ -24,7 +24,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q \"monai[nibabel,itk,matplotlib,tqdm]\" \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q \"monai[nibabel,itk,matplotlib,tqdm]\" \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/PyImageJ/ImageJImgLib2.ipynb b/examples/integrations/PyImageJ/ImageJImgLib2.ipynb index 2d9c874d..1a7a6e7c 100644 --- a/examples/integrations/PyImageJ/ImageJImgLib2.ipynb +++ b/examples/integrations/PyImageJ/ImageJImgLib2.ipynb @@ -31,7 +31,7 @@ "import sys\n", "\n", "!conda install --yes --prefix {sys.prefix} -c conda-forge pyimagej\n", - "!{sys.executable} -m pip install -q \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/PyVista/LiDAR.ipynb b/examples/integrations/PyVista/LiDAR.ipynb index becfca4c..1cbd965c 100644 --- a/examples/integrations/PyVista/LiDAR.ipynb +++ b/examples/integrations/PyVista/LiDAR.ipynb @@ -22,7 +22,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q pyvista \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q pyvista \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/PyVista/UniformGrid.ipynb b/examples/integrations/PyVista/UniformGrid.ipynb index af86b331..6bf0cd33 100644 --- a/examples/integrations/PyVista/UniformGrid.ipynb +++ b/examples/integrations/PyVista/UniformGrid.ipynb @@ -22,7 +22,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q pyvista \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q pyvista \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/dask/DaskArray.ipynb b/examples/integrations/dask/DaskArray.ipynb index 33a9ddcb..d81060ce 100644 --- a/examples/integrations/dask/DaskArray.ipynb +++ b/examples/integrations/dask/DaskArray.ipynb @@ -22,7 +22,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q 'dask[diagnostics]' toolz scikit-image pooch matplotlib \"itkwidgets[all]>=1.0a49\" \"itk-io>=5.3.0\"" + "!{sys.executable} -m pip install -q 'dask[diagnostics]' toolz scikit-image pooch matplotlib \"itkwidgets[all]>=1.0a55\" \"itk-io>=5.3.0\"" ] }, { diff --git a/examples/integrations/itk/3DImage.ipynb b/examples/integrations/itk/3DImage.ipynb index 0e6276d1..a21f9eb2 100644 --- a/examples/integrations/itk/3DImage.ipynb +++ b/examples/integrations/itk/3DImage.ipynb @@ -23,7 +23,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q pooch tqdm \"itk-io>=5.3.0\" \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q pooch tqdm \"itk-io>=5.3.0\" \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/itk/DICOM.ipynb b/examples/integrations/itk/DICOM.ipynb index 0b2cad41..26298946 100644 --- a/examples/integrations/itk/DICOM.ipynb +++ b/examples/integrations/itk/DICOM.ipynb @@ -22,7 +22,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q --upgrade \"itk-io>=5.3.0\" tqdm pooch \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q --upgrade \"itk-io>=5.3.0\" tqdm pooch \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/itk/IDC_Seg_Primer_Examples.ipynb b/examples/integrations/itk/IDC_Seg_Primer_Examples.ipynb index 2093a0ed..a0d68d1b 100644 --- a/examples/integrations/itk/IDC_Seg_Primer_Examples.ipynb +++ b/examples/integrations/itk/IDC_Seg_Primer_Examples.ipynb @@ -33,7 +33,7 @@ "source": [ "import sys\n", "\n", - "!{sys.executable} -m pip install -q pooch itk-io \"itkwidgets[all]>=1.0a49\" pydicom pydicom-seg numpy" + "!{sys.executable} -m pip install -q pooch itk-io \"itkwidgets[all]>=1.0a55\" pydicom pydicom-seg numpy" ] }, { diff --git a/examples/integrations/itk/MulticomponentNumPy.ipynb b/examples/integrations/itk/MulticomponentNumPy.ipynb index bdb5d306..6345f7ec 100644 --- a/examples/integrations/itk/MulticomponentNumPy.ipynb +++ b/examples/integrations/itk/MulticomponentNumPy.ipynb @@ -21,7 +21,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q itk-core \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q itk-core \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/itk/SelectROI.ipynb b/examples/integrations/itk/SelectROI.ipynb index 31078a1a..ccb4c2ef 100644 --- a/examples/integrations/itk/SelectROI.ipynb +++ b/examples/integrations/itk/SelectROI.ipynb @@ -32,7 +32,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q pooch tqdm \"itk-io>=5.3.0\" \"itk-filtering>=5.3.0\" \"itkwidgets[all]>=1.0a49\" rich" + "!{sys.executable} -m pip install -q pooch tqdm \"itk-io>=5.3.0\" \"itk-filtering>=5.3.0\" \"itkwidgets[all]>=1.0a55\" rich" ] }, { diff --git a/examples/integrations/itk/ThinPlateSpline.ipynb b/examples/integrations/itk/ThinPlateSpline.ipynb index 859d0e87..5726a1f1 100644 --- a/examples/integrations/itk/ThinPlateSpline.ipynb +++ b/examples/integrations/itk/ThinPlateSpline.ipynb @@ -21,7 +21,7 @@ "source": [ "import sys, os\n", "\n", - "!{sys.executable} -m pip install -q tqdm pooch \"itk>=5.3.0\" \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q tqdm pooch \"itk>=5.3.0\" \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/itkwasm/3DImage.ipynb b/examples/integrations/itkwasm/3DImage.ipynb index dffea41a..46d7ae2e 100644 --- a/examples/integrations/itkwasm/3DImage.ipynb +++ b/examples/integrations/itkwasm/3DImage.ipynb @@ -23,7 +23,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q pooch tqdm rich \"itkwasm-image-io\" \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q pooch tqdm rich \"itkwasm-image-io\" \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/itkwasm/SelectROI.ipynb b/examples/integrations/itkwasm/SelectROI.ipynb index 301af836..7838b077 100644 --- a/examples/integrations/itkwasm/SelectROI.ipynb +++ b/examples/integrations/itkwasm/SelectROI.ipynb @@ -23,7 +23,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q pooch tqdm \"itkwidgets[all]>=1.0a49\" rich itkwasm-image-io" + "!{sys.executable} -m pip install -q pooch tqdm \"itkwidgets[all]>=1.0a55\" rich itkwasm-image-io" ] }, { diff --git a/examples/integrations/vtk/vtkImageData.ipynb b/examples/integrations/vtk/vtkImageData.ipynb index 342537ed..2f5bafc4 100644 --- a/examples/integrations/vtk/vtkImageData.ipynb +++ b/examples/integrations/vtk/vtkImageData.ipynb @@ -22,7 +22,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q vtk \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q vtk \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/vtk/vtkPolyDataPointSet.ipynb b/examples/integrations/vtk/vtkPolyDataPointSet.ipynb index 83842c41..22d5cdc5 100644 --- a/examples/integrations/vtk/vtkPolyDataPointSet.ipynb +++ b/examples/integrations/vtk/vtkPolyDataPointSet.ipynb @@ -22,7 +22,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q vtk \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q vtk \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/xarray/DataArray.ipynb b/examples/integrations/xarray/DataArray.ipynb index ebf9264b..7df1e0da 100644 --- a/examples/integrations/xarray/DataArray.ipynb +++ b/examples/integrations/xarray/DataArray.ipynb @@ -21,7 +21,7 @@ "source": [ "import sys\n", "\n", - "!{sys.executable} -m pip install -q netCDF4 xarray pooch \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q netCDF4 xarray pooch \"itkwidgets[all]>=1.0a55\"" ] }, { diff --git a/examples/integrations/zarr/OME-NGFF-Brainstem-MRI.ipynb b/examples/integrations/zarr/OME-NGFF-Brainstem-MRI.ipynb index 1be1af0e..ec6ed041 100644 --- a/examples/integrations/zarr/OME-NGFF-Brainstem-MRI.ipynb +++ b/examples/integrations/zarr/OME-NGFF-Brainstem-MRI.ipynb @@ -22,7 +22,7 @@ "# Install dependencies for this example\n", "import sys\n", "\n", - "!{sys.executable} -m pip install -q zarr \"fsspec[http]\" \"itkwidgets[all]>=1.0a49\"" + "!{sys.executable} -m pip install -q zarr \"fsspec[http]\" \"itkwidgets[all]>=1.0a55\"" ] }, {