No gene symbols

[hernandezvargash]

Thanks for this useful tool.
I'm trying to visualize my seurat object. I can see my UMAP plot with the reductions I made in R, however I don't gene symbols when I create the project: (100.0%) genes were not found in Ensembl. This happened with .rds .h5ad and .loom formats, also after converting my gene symbols to Ensembl IDs.
Thanks for your help!

[fabdavid]

Hello @hernandezvargash, thanks for your message. Can you please double check that you selected the right species?

[hernandezvargash]

thanks for the fast response,
yes, I'm using human gene symbols, they are not recognized when I save my object as an .rds or with SaveH5Seurat + Convert to .h5ad. However, I just realized that I get the gene symbols when I save with SaveLoom(seurat.object). The pipeline works nicely with this loom file.

My problem now is that the loom file did not save my reductions, and I want to keep my harmony integration. Is this actually possible?

[fabdavid]

Can you please tell me which is the project key or name. I can have a look more precisely like this.