diff --git a/HMM/Profile.pm b/HMM/Profile.pm
index 8f60a9b..bde96ef 100755
--- a/HMM/Profile.pm
+++ b/HMM/Profile.pm
@@ -882,12 +882,14 @@ sub _parseFile3 {
         # Match line
         if ($substate == 0)
         {
-            my ($s, $ascii, $map, $consensus, $rf, $cs);
+            my ($s, $ascii, $map, $consensus, $rf, $mm, $cs);
 
-            if ($self->version =~ /[abcd]$/) {
+            if ($self->version =~ /[abcd]$/) {  # hmm versions a..d or greater
                ($s, $ascii, $map, $rf, $cs)             = $line =~ /^\s*(\d+)\s+(.*)\s+(\S+)\s+(\S)\s+(\S)\s*$/;
-            } else {  # hmm version e or greater
+            } elsif ($self->version =~ /e$/) {  # hmm version e
                ($s, $ascii, $map, $consensus, $rf, $cs) = $line =~ /^\s*(\d+)\s+(.*)\s+(\S+)\s+(\S)\s+(\S)\s+(\S)\s*$/;
+            } else {  # hmm version f or greater
+               ($s, $ascii, $map, $consensus, $rf, $mm, $cs) = $line =~ /^\s*(\d+)\s+(.*)\s+(\S+)\s+(\S)\s+(\S)\s+(\S)\s+(\S)\s*$/;
             }
 
 
diff --git a/scripts/make_profile.pl b/scripts/make_profile.pl
index 5635238..69b0632 100755
--- a/scripts/make_profile.pl
+++ b/scripts/make_profile.pl
@@ -1,5 +1,8 @@
 #!/usr/bin/env perl
 
+use FindBin;                 # locate this script
+use lib "$FindBin::Bin/..";  # use the parent directory; this is for HMM::Profile, calling from some other directory
+
 use strict;
 use warnings;
 use HMM::Profile;
@@ -21,9 +24,6 @@
 $logo->print_logo_dimensions(
     -xsize          => $xsize,
     -ysize          => $ysize,
-    -x_title        => 'Relative Entropy',
-    -y_title        => 'Contribution',
-    -graph_title    => $graph_title,
     -greyscale      => $greyscale,
     -height_logodds => $height_logodds
   )  or die "Error writing $outfile!\n";
@@ -35,13 +35,13 @@
     -file           => $outfile,
     -xsize          => $xsize,
     -ysize          => $ysize,
-    -x_title        => 'Relative Entropy',
-    -y_title        => 'Contribution',
+    -x_title        => 'Position',
+    -y_title        => 'Contribution (bits)',
     -graph_title    => $graph_title,
     -greyscale      => $greyscale,
     -height_logodds => $height_logodds
   )  or die "Error writing $outfile!\n";
 
-my $data = $logo->flatten($height_logodds);
+#my $data = $logo->flatten($height_logodds);
 #print STDOUT p( $data);
 print STDOUT "Finished drawing Logo...\n";