P-value THOR

[sathvik-samaga]

I was wondering how the P_value in the 11th column is calculated as most of them seem to be above 1.0 which is not a standard value, this is after i set the p_value cutoff to be 0.05. I needed to calculate FDR and i cant do it with the current p_values, is there some sort of post processing step that i need to do to obtain them?

[TomMakesThings]

I was also confused by this, but one of the THOR post-analysis scripts mentions the p-values are -log_10(p-value). To get the regular p-value, you'd need to reverse the negative log, i.e. if x = -log_10(p-value), then p-value = 10^(-x).