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Description
Input:
AllTheBacteria dataset downloaded from https://osf.io/xv7q9/.
Command:
cuttlefish build -m 128 -s references.fa -k 27 -t 128 -o unitigs -w workdir --ref -c 1
The dataset is about 9.2TB large and the server has about 21TB total disk space.
Alternatively running with -k 63 seems to get further, but so far it hasn't terminated yet, so I can't say if it works.
Log:
Constructing the compacted reference de Bruijn graph for k = 27.
Enumerating the edges of the de Bruijn graph.
***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Stage 1: 100%
Warning: using counter_max == 1 will cause not storying counters in KMC output file, all counters will be assumed to be 1. This is experimental and is not currently supported in kmc_tools. Will be implemented soon.
Stage 2: 93%
*Command terminated by signal 11
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