Skip to content

Allow variant tracks to use one URL to show overview and another for the details popup #38

@bbimber

Description

@bbimber

As-is, a JBrowse track involves downloading chunks of the VCF file and parsing this on the client. Showing the individual variants generally does not require having any knowledge of the sample genotypes. A large VCF with 4400 genotypes explodes in size (basically 4400 additional columns), and contains a ton of data we dont care about. However, we do need more detail for the variant popup specifically.

It would be great if we could configure a track to read most data from a URL with a 'slim' version of the VCF, and only then the user clicks a specific variant would we query an alternate URL containing the full VCF. this alternate URL would be a very surgical loading of data, from just ~1 site.

This could really help the original VCF-backed table view too.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions