diff --git a/SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.329-12.330.sql b/SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.329-12.330.sql
new file mode 100644
index 000000000..b46a9866d
--- /dev/null
+++ b/SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.329-12.330.sql
@@ -0,0 +1,12 @@
+CREATE INDEX IDX_haplotypes_name_date ON sequenceanalysis.haplotypes
+(
+	Name ASC,
+	datedisabled ASC
+);
+
+CREATE INDEX IDX_haplotype_sequences_name_haplotype_type ON sequenceanalysis.haplotype_sequences
+(
+	haplotype ASC,
+	name ASC,
+	type ASC
+);
\ No newline at end of file
diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.329-12.330.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.329-12.330.sql
new file mode 100644
index 000000000..73397ec1d
--- /dev/null
+++ b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.329-12.330.sql
@@ -0,0 +1,39 @@
+CREATE NONCLUSTERED INDEX IDX_haplotypes_name_date ON sequenceanalysis.haplotypes
+(
+	Name ASC,
+	datedisabled ASC
+);
+
+CREATE NONCLUSTERED INDEX IDX_haplotype_sequences_name_haplotype_type ON sequenceanalysis.haplotype_sequences
+(
+	haplotype ASC,
+	name ASC,
+	type ASC
+);
+
+CREATE NONCLUSTERED INDEX IDX_alignment_summary_analysis_id_rowid_container_total ON sequenceanalysis.alignment_summary
+(
+	analysis_id ASC,
+	rowid ASC,
+	container ASC
+)
+INCLUDE(total)
+
+CREATE STATISTICS STAT_ref_nt_sequence_rowid_locus_container ON sequenceanalysis.ref_nt_sequences (RowId, locus, container)
+WITH AUTO_DROP = OFF
+
+CREATE STATISTICS STAT_ref_nt_sequence_locus_container ON sequenceanalysis.ref_nt_sequences (locus, container)
+WITH AUTO_DROP = OFF
+
+CREATE STATISTICS STAT_sequence_analyses_container_readset ON sequenceanalysis.sequence_analyses (Container, readset)
+WITH AUTO_DROP = OFF
+
+CREATE STATISTICS STAT_sequence_readsets_rowid_container ON sequenceanalysis.sequence_readsets (RowId, Container)
+WITH AUTO_DROP = OFF
+
+CREATE STATISTICS STAT_asj_alignmentid_container_ref_nt_id ON sequenceanalysis.alignment_summary_junction (alignment_id, container, ref_nt_id)
+WITH AUTO_DROP = OFF
+              
+CREATE STATISTICS STAT_asj_alignmentid_ref_nt_id_status_alignment_id ON sequenceanalysis.alignment_summary_junction (ref_nt_id, status, alignment_id)
+WITH AUTO_DROP = OFF
+
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisModule.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisModule.java
index 466c12ac7..3fc642130 100644
--- a/SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisModule.java
+++ b/SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisModule.java
@@ -211,7 +211,7 @@ public String getName()
     @Override
     public Double getSchemaVersion()
     {
-        return 12.329;
+        return 12.330;
     }
 
     @Override