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Hello,
I am trying to run CRISPRidentify on one of the test fasta files with the following command
python CRISPRidentify.py --file NC_017040.1.fasta
but I get the following error.
Can you please help me?
thanks
NC_017040
Executing file 1 out of 1 (NC_017040.fa)
- Run initial array detection
- Refine detected arrays
- Evaluate candidates
- Enhance evaluated arrays
- Complement arrays with additional info
Traceback (most recent call last):
File "CRISPRidentify.py", line 306, in
main()
File "CRISPRidentify.py", line 290, in main
run_over_folder_of_files(folder_multifasta, folder_result, pickle_folder, json_folder)
File "CRISPRidentify.py", line 251, in run_over_folder_of_files
absolute_directory_path=script_absolute_path)
File "/g/data/kq94/projects/xantho/components/pipeline.py", line 34, in init
self._run_non_crispr_computation()
File "/g/data/kq94/projects/xantho/components/pipeline.py", line 79, in _run_non_crispr_computation
absolute_directory_path=self.absolute_directory_path)
File "/g/data/kq94/projects/xantho/components/module_non_array_computations.py", line 37, in init
self._calculate_all_non_array_values()
File "/g/data/kq94/projects/xantho/components/module_non_array_computations.py", line 49, in _calculate_all_non_array_values
self._calculate_strand()
File "/g/data/kq94/projects/xantho/components/module_non_array_computations.py", line 178, in _calculate_strand
absolute_directory_path=self.absolute_directory_path)
File "/g/data/kq94/projects/xantho/components/components_non_array_computations.py", line 115, in init
self._compute_all_strands()
File "/g/data/kq94/projects/xantho/components/components_non_array_computations.py", line 141, in _compute_all_strands
with open("ResultsStrand/CRISPRstrand_Summary.tsv", "r") as f:
FileNotFoundError: [Errno 2] No such file or directory: 'ResultsStrand/CRISPRstrand_Summary.tsv'
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