From 6e51c5840f15944041f1ba664c92ec7e16cbf2a5 Mon Sep 17 00:00:00 2001 From: MattAitken Date: Wed, 25 Aug 2021 09:20:09 -0700 Subject: [PATCH] update install docs --- docs/install.rst | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/docs/install.rst b/docs/install.rst index 1207dfa..1abc6f1 100644 --- a/docs/install.rst +++ b/docs/install.rst @@ -12,9 +12,12 @@ We recommend installing `transcriptomic_clustering` into a managed Python enviro Two popular tools for managing Python environments are `anaconda `_ and `venv `_. The rest of this document assumes that you have created and activated an environment using one of these tools. Using anaconda, this looks like: +You only need to include gcc_linux-64 and gxx_linux if you see a compiler error related to annoy. +Likewise nb_conda and matplotlib are optional, used for in the notebooks. + .. code-block:: bash - conda create -y --name environment-name python=3.8 + conda create -y --name environment-name python=3.8 gcc_linux-64 gxx_linux-64 nb_conda matplotlib conda activate environment-name and using venv: