getting prevalence for OXA-48

[raphenya]

grep 3001782 index-for-model-sequences.txt | grep Perfect | cut -f6 | sort -h | uniq -c
  52 Citrobacter freundii
   3 Citrobacter koseri
   1 Citrobacter werkmanii
   1 Citrobacter youngae
   1 Enterobacter chengduensis
   3 Enterobacter cloacae
  29 Enterobacter hormaechei
   1 Enterobacter kobei
   1 Enterobacter roggenkampii
  85 Escherichia coli
   2 Klebsiella michiganensis
   2 Klebsiella oxytoca
 694 Klebsiella pneumoniae
   9 Klebsiella quasipneumoniae
   2 Proteus mirabilis
   1 Raoultella planticola
  16 Serratia marcescens